Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq322 282 1e-70 seq578 170 6e-37 seq545 131 5e-25 seq441 96.9 1e-14 seq577 89.7 2e-12 seq475 86.0 2e-11 >seq322 Length=89083 Score = 282 bits (312), Expect = 1e-70 Identities = 940/1447 (65%), Gaps = 19/1447 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || ||||| || | ||| ||| | || || | || || Sbjct 52346 GGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAG 52405 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 52406 ATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACA 52465 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| || | || || | || ||||| || | || || || |||| || ||| Sbjct 52466 GAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTT 52525 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| || ||||| || ||||| | | || |||| | || || || | Sbjct 52526 TTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATG 52585 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || || || | | ||| | ||| ||| ||||||| || | Sbjct 52586 AAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAAC 52645 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTAGTTA 349562 || |||||| || || || |||| | ||| || ||||||| | ||||| | || | Sbjct 52646 TACCAAGGTGCTACGAAGAC--TTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 52703 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||||||||| || | | | || || ||| | || || |||||||| | Sbjct 52704 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 52763 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 |||| || || || || ||| | ||||| || ||||| || || |||| ||||||| Sbjct 52764 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 52823 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || ||||| || || || |||||||| || || ||||| || | Sbjct 52824 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 52883 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | |||| ||| | || || || || | |||||||| || |||| Sbjct 52884 ACAAGAAGGGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATTTG 52943 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || || || || ||||| || || || || |||||||||| Sbjct 52944 ATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGATA 53003 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG--TTAAAGAATT 349920 | ||| | |||||||| || || || || | |||| | | || || | | || || Sbjct 53004 CCCATTTGGGTGGAGAGGACTTCGACAACAGACTCG--TGGACTTCTGCATGCAGGATTT 53061 Query 349921 TAAGCG--TCAAGCTAA-AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | ||| || | | || | || | | ||||| | Sbjct 53062 CAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGCG 53121 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| ||||| | || ||||| || | || | ||||| || | || || || Sbjct 53122 CACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGAT 53181 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| || ||| |||| |||| | |||| || | || || || || || || Sbjct 53182 CGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGGA 53241 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || |||||| || || | | | || ||||| || || || || || || Sbjct 53242 GCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACGC 53301 Query 350158 AAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || | || ||| || | || || || || || || || ||||| ||||||| Sbjct 53302 TGCCATCGAC-AAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 53360 Query 350217 CAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 | || |||| ||| | |||| ||||| || |||| ||| || || | | || || Sbjct 53361 CCAAGATTCAGCAG--ATTATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 53418 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || ||||| |||||||| || ||||| | ||| | || Sbjct 53419 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 53478 Query 350335 TAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATT 350394 || | ||| | | | ||||| | || ||||| ||| | ||||| |||||||| || Sbjct 53479 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 53538 Query 350395 AGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAA 350454 || ||| |||| | || ||||| | || | || | || | || || || Sbjct 53539 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 53598 Query 350455 AAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATT 350514 |||||||| || | || | ||||| || ||||||| || |||||||| || Sbjct 53599 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 53658 Query 350515 TGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG-TG 350573 |||||| |||||||| || || ||||| || ||||| || || | || | || Sbjct 53659 TGAAGGAGAACGTGCCATGACCAAGGATAACAA-CCTCTTGGGCAAGTTCCACTTGGATG 53717 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 ||| || || || | || || ||||| || |||||| | |||||||||||| ||| Sbjct 53718 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 53777 Query 350634 ATGGTAT 350640 |||| || Sbjct 53778 ATGGCAT 53784 >seq578 Length=112255 Score = 170 bits (188), Expect = 6e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 51098 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51039 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 51038 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 50979 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 50978 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 50919 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| || || |||| || || || || || || || ||||| ||||||||| Sbjct 50918 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 50867 Score = 170 bits (188), Expect = 6e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| || ||||| || |||||||| | ||| | ||||| Sbjct 51763 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 51704 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||| Sbjct 51703 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 51644 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || ||||| || || | ||| ||||| ||||| || | ||| | |||| Sbjct 51643 TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTC 51584 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || ||||| |||||||| Sbjct 51583 TTGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 51554 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51495 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | || || || || || || || ||||| || ||||| ||||||||||| Sbjct 51494 AGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 51435 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 51434 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 51375 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | |||||| || || || || || ||||| |||||||| Sbjct 51374 AACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 51326 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51267 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | || || || || || || || ||||| || ||||| ||||||||||| Sbjct 51266 AGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 51207 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 51206 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 51147 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | |||||| || || || || || || || |||||||| Sbjct 51146 AACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 >seq545 Length=63443 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || || || || || ||||| || | || | |||||| || | Sbjct 2589 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 2531 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || | Sbjct 2530 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 2471 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || |||||||| || || | ||| || || || || || || || | || || | Sbjct 2470 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 2411 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || || || |||||| Sbjct 2410 CCGTGAGGGTTTTCACGAAGATTTGCATT 2382 >seq441 Length=177244 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||||| || | || |||||| || | || || ||||| || | ||||| || Sbjct 156469 ATGGTGTTGGGCAAGATGAAGCAAGTGGCCGAGAACTATTTGGGAAGAGAAGTAAAAAAT 156410 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 156409 GCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCA 156350 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || |||||| | ||||| | | || | ||||| |||||||| || || ||| Sbjct 156349 GGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATT 156290 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 |||||||| | || || || ||| || || | ||| | | | ||| | ||| Sbjct 156289 GCATATGGATTGGACAA---GAAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGT 156236 Query 349790 GGTGGTACTTTTGATGTATC 349809 |||||||| || ||||| || Sbjct 156235 GGTGGTACCTTCGATGTCTC 156216 >seq577 Length=236524 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || ||| || || Sbjct 138303 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCAAGTCCGCG 138244 Query 423824 TGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||||| |||||| |||||||| Sbjct 138243 TGGGTTCAAATCCCACTTCGTGCATT 138218 >seq475 Length=256377 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC---GAAAGCCT 423821 |||| ||||||||||||||| |||||||| |||||||| || |||| ||| || Sbjct 81684 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGTTCCCCTGGTCGTGAAGACCG 81626 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| |||||||||||||||||| Sbjct 81625 CGTGGGTTCGAACCCCACTCCGTGCATT 81598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229336271673