Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq578 163 3e-35 seq545 138 1e-27 seq548 107 2e-18 seq958 95.1 1e-14 >seq578 Length=112255 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || || || |||||||| || |||||| || Sbjct 50867 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 50926 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || || Sbjct 50927 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 50986 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 50987 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 51046 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 51047 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51094 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || |||||||| || || | || |||||| || Sbjct 51552 ATGCAGATATTTGTGAAGACTTTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51611 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || |||||||| ||||| || |||||||| || ||| Sbjct 51612 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 51671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 51672 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 51731 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || ||||| || || |||||| | || ||||||| || || || ||| Sbjct 51732 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAA 51782 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || |||||| || Sbjct 51324 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51383 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 51384 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51443 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||| | | || || | || || || Sbjct 51444 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51503 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 51504 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51550 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || |||||||| || || | || |||||| || Sbjct 51096 ATGCAGATATTCGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51155 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 51156 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51215 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||| | | || || | || || || Sbjct 51216 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51275 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 51276 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51322 >seq545 Length=63443 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || || || ||| | Sbjct 2382 AATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTC 2441 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||| || |||||||| || ||||| || || || Sbjct 2442 GGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCA 2501 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || |||||||||| | ||||| | || || || Sbjct 2502 GCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAA 2561 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||||||||| Sbjct 2562 CATCCAGAAGGAAAGCACTCTTCA 2585 >seq548 Length=147261 Score = 107 bits (118), Expect = 2e-18 Identities = 244/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGC 80783 || || || || || || || | | |||| |||||||| ||| ||| | | || ||| Sbjct 106698 TCCGCGAGCCCTTGCACACCCAAGCCGATGGGGCGGTGTCGCAGGTTGCTGTAGCG-GGC 106640 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || || | ||||| | || |||||||||| |||||||| || || || | ||| Sbjct 106639 TTCTGGGACGGGGTAGTAATTTCTATCGATGACACGGTTCAGATTCCGAGTCATGACCTT 106580 Query 80844 TGTAACATC-ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCG 80896 |||| | |||| | ||| |||||||| | ||| || ||| ||| | Sbjct 106579 CACAACAGCCATGA-GCTTCGCGAAGTCGAAGAGCTTCTTCTCGACATCCACGAATCGAG 106521 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | || || ||| |||| |||||||| || ||||| || | | || |||| |||| Sbjct 106520 GGAGAGACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGA 106461 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||| ||||| |||| || ||| | |||| ||||| |||||| ||| || Sbjct 106460 TTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGT 106401 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||||| |||||| ||||| || || |||| ||| || | ||||| | Sbjct 106400 TGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATAG 106341 Query 81077 CG 81078 || Sbjct 106340 CG 106339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||||| | |||||| |||||||||||||| || ||||| ||| | |||| Sbjct 107752 GCCTGCGTCCTTAAATAGTAAATGCCCGTCTTGAGTCCGGAATTCCACGCGTGGAAGTGC 107693 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | ||||||||| | ||||| ||| |||| ||| || | |||||| ||||| Sbjct 107692 ATCGTCGAGAGCTTCGCGAAAGTGGGATTCCGCATGTGGATATTTAAAGACTGGGACTGG 107633 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT--TG-ACTTTTGTGGAATTTCC 80208 | ||| | | | |||||| ||||||| |||| ||| || || | | || ||| Sbjct 107632 TCTACGAAGGGCGCGCGATCTACCGCCATATCAACAATGCTGCGCTGCTTT---ATCTCC 107576 Query 80209 CATACTGTACGATACACCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || || ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 107575 CAAACCGTGCGATAAAGCTCCTTTAGATCGTCCGGAATCTCTGCCAGATGCTGCACGCTG 107516 Query 80266 CC 80267 || Sbjct 107515 CC 107514 >seq958 Length=198477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCG 32061 |||||||| ||| | | ||| | ||||||||||| | | || ||||||||||| Sbjct 195367 CAGCGCAAAGTGCTGTTTGCCGTCTTCAAGAAGAACACGAAGGCCGAGCTGAAGGTGGCG 195308 Query 32062 CAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAG 32121 || || || || || || || ||||| | || ||||||||||||||| ||| | ||| Sbjct 195307 CAACTCTCTGGGTATGTTGCCGAGCAGAGTGCGTATCACCACGGCGAGCAGTCTTTGCAG 195248 Query 32122 GGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAG 32181 ||||| | | | | || ||| || || || || || || || || || ||| Sbjct 195247 CAAACCATCATTACCATGGCCCAGCGGTTCGTTGGAAGCAACAATCTTAATTTCCTTGAG 195188 Query 32182 CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTAC 32241 || ||| ||||| || || | | || || |||||||| | |||| ||| Sbjct 195187 CCCGTTGGTCAGTTCGGATCCAGAAAAGAGGGCGGGAAGGATGCGTCTGCACCCCGCTAC 195128 Query 32242 ATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG--TCGGACGATGCGG 32299 ||||| || |||||||| | || ||| ||||| |||| | || || | Sbjct 195127 ATCTTTACAAAGCTCGCACCGTACACACGCCTCGTTTTC--CCCGAAGCCGATGACCCTC 195070 Query 32300 TGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGC 32359 ||||| ||||| | ||| || || ||| | |||||||| | |||| ||| || Sbjct 195069 TGCTCGAGTACCTCTATGAGGAGGGGCAGAAGATCGAGCCGAAATACTACGTTCCTGTCA 195010 Query 32360 TTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGT 32404 | || | | | || ||||| ||||||||||| ||||||| Sbjct 195009 TCCCCACCGTGCTTGTCAACGGCAGCGAAGGCATCGGCACGGGGT 194965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301196615920