Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq545 93.3 3e-14 seq578 91.5 1e-13 >seq545 Length=63443 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| |||||||||||||| ||||| ||||| || || || || | Sbjct 2380 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 2439 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| ||||| ||||| ||||| | ||||| ||| Sbjct 2440 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 2499 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || || ||||| || || || | | || | |||||| Sbjct 2500 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 2559 Query 23788 AACATACAAAAAGA 23801 ||||| || || || Sbjct 2560 AACATCCAGAAGGA 2573 >seq578 Length=112255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || ||||| || ||||| || ||||| || ||||| | | Sbjct 50867 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 50926 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||| || || || ||||| | || || ||||| Sbjct 50927 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 50986 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTAC 23787 |||||| | || ||||||||||| || ||||| || | | |||||| |||||| Sbjct 50987 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTT--CTGATTAC 51044 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || ||||| || | ||||| ||| Sbjct 51045 AACATTCAGAAGGAGTCAACCCTTCATTTGGTT 51077 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| | || ||||| | | Sbjct 51096 ATGCAGATATTCGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51155 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||| || || || ||||| | || || ||||| Sbjct 51156 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51215 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 |||||| | || ||||||||||| || ||||| |||| | |||||| ||||||| Sbjct 51216 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTT--CTGATTACA 51273 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || ||||| || | ||||| ||| Sbjct 51274 ACATTCAGAAGGAGTCAACCCTTCATTTGGTT 51305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004281735828