Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq545 147 5e-30 seq578 134 3e-26 seq961 86.0 1e-11 >seq545 Length=63443 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 282889 GTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||||| || | |||||||| || ||||||||||| || | || || | ||||||| Sbjct 2593 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 2534 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || ||||| || || || |||| ||| || || ||| |||||| || |||||||||| Sbjct 2533 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 2474 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 |||| || || ||||| | ||||| || ||||||| || || || || ||||| || | Sbjct 2473 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 2414 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| | || || ||||| || |||||||| Sbjct 2413 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTT 2380 >seq578 Length=112255 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| |||| | Sbjct 51322 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51263 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| ||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 51262 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51203 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||||||||| || || | ||||| || || || | || || Sbjct 51202 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51143 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || |||| |||||| |||||||||||||| Sbjct 51142 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || || || || |||||||| |||| | Sbjct 51778 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51719 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 51718 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51659 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || || |||||||| || || | ||||| || || || | || || Sbjct 51658 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51599 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || ||||||||||| || ||||||||||| Sbjct 51598 TCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| |||| | Sbjct 51550 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51491 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| ||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 51490 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51431 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||||||||| || || | ||||| || || || | || || Sbjct 51430 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51371 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 51370 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| |||| | Sbjct 51094 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51035 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 51034 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 50975 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||||||||| || || | ||||| || || || | || || Sbjct 50974 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 50915 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || || || | |||||| || || ||||||||| Sbjct 50914 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 50867 >seq961 Length=12354 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAG 230303 ||||||| ||||| ||||||||||| || ||||| | || || || | || Sbjct 3403 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 3344 Query 230304 AAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAA 230363 || | | ||| | | ||| ||||| | |||||||| || || || ||||| || ||| Sbjct 3343 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 3284 Query 230364 ACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 || ||||||||||| ||||| ||| | || || |||| | |||| || Sbjct 3283 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGT 3237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046721885952314