Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq545 134 1e-26 seq578 125 5e-24 >seq545 Length=63443 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||||| ||||| |||||||||||||| | ||| | | | || || Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || |||| |||||||||||| | || | |||||||| || Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||| | || | ||||| || | | ||||| |||| ||| || || || Sbjct 2471 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 2412 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| ||||||||||||||||| Sbjct 2411 CCCGTGAGGGTTTTCACGAAGATTTGCAT 2383 >seq578 Length=112255 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||| ||||| || |||||| || ||||||||||| Sbjct 51326 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51267 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | |||| ||||||||||| |||||||| || | |||||||||||| | Sbjct 51266 AGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 51207 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | ||||| || | | || Sbjct 51206 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 51147 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| || || ||||| || || || ||||||||||| || |||||| Sbjct 51146 AACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCATG 51095 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||| ||||| || |||||| || ||||||||||| Sbjct 51554 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51495 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | |||| ||||||||||| |||||||| || | |||||||||||| | Sbjct 51494 AGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 51435 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | ||||| || | | || Sbjct 51434 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 51375 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| || || ||||| || || || |||||||| || || |||||| Sbjct 51374 AACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 51323 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||| ||||| || |||||| || ||||||||||| Sbjct 51098 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 51039 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || ||||||||||| |||||||| || | |||||||||||| | Sbjct 51038 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 50979 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | ||||| || | | || Sbjct 50978 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 50919 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 50918 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 Score = 111 bits (122), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTC--AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 ||||| ||| ||| || | || |||| ||||| || |||||| || |||||||| Sbjct 51785 TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTA 51726 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || ||||||||||| |||||||| || | |||||||||||| Sbjct 51725 ATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 51666 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| ||| ||||| ||||| || | ||||| || | | Sbjct 51665 AGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGG 51606 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| || || ||||| || || | |||||||| || || |||||| Sbjct 51605 CTCAACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCATG 51551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984735888547