Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq867 102 5e-17 seq409 96.9 2e-15 >seq867 Length=9987 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | ||| ||||| ||||| |||||||| || || || | | || || Sbjct 1698 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 1639 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||| || || |||||||| || |||||||| || || | || |||||||| Sbjct 1638 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 1579 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 || || ||||| || | || | ||| | | || ||||||| |||||||||||| Sbjct 1578 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 1519 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| |||||||| ||||| ||||| Sbjct 1518 CCCGTGAGGGTTTTCACGAAGATTTGCAT 1490 >seq409 Length=48402 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || | | | || |||| ||||||||| || ||| Sbjct 48215 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAA 48156 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || || | || ||||| || |||||| ||| | || Sbjct 48155 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 48096 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| || |||||||| || |||||||| || ||| Sbjct 48095 TCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACA 48036 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 48035 AAGATCTGCAT 48025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067090012320