Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq867 111 1e-19 seq409 107 2e-18 >seq867 Length=9987 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || || || || ||||| ||||| | ||||| || || Sbjct 1487 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 1546 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || || ||| |||||||||||| | ||||| || Sbjct 1547 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 1606 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| |||||| | || || | ||| | ||||| Sbjct 1607 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 1666 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||||| || || ||| |||||||| |||||| Sbjct 1667 AACATCCAGAAGGAAAGCACTCTTCACTTGGTAC 1700 >seq409 Length=48402 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| ||||| ||||| || || | || ||||| || || Sbjct 48025 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 48084 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || || || ||| | ||| ||||||||| | || || || || Sbjct 48085 GATACCATCGAAAATGTGAAGGCAAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGATCA 48143 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| |||| || | ||| | ||||| || Sbjct 48144 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 48203 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || || |||||| |||| || | ||||||| || Sbjct 48204 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 48251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||| | | ||||| || ||||| | |||||||| || || Sbjct 48252 CATGCAGATATTAGTGAAGACTCCGCCTGGCAAGACAATCACATTGGACGTTGAGCCATC 48311 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || || ||| | ||| ||||||||| | || || || | Sbjct 48312 AGATACCATCGAAAATGTGAAGGCAAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGATC 48370 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTG 31342 |||||||||| || || || ||||| ||| || Sbjct 48371 AGCAGCGTCTCATTTTTGCCGGCAAGCAGCTG 48402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759451616240