Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq236 136 1e-27 >seq236 Length=763 Score = 136 bits (150), Expect = 1e-27 Identities = 217/305 (71%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 29492 TGACCCGTCAGGTGTGGGGCAGATTCTGGATTCACTGGCGGAAGCCGGGATCCCCGACGG 29551 |||||| |||| |||| |||| ||| ||||| ||||| ||||| || | | | Sbjct 614 TGACCCTGCAGGGCTGGGTGGGATTACCGATGCACTGCACGAAGCAGGGATACC-GCCCG 556 Query 29552 AATTGTTG-TGGGGATAAGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGC 29610 | | || | || || |||||||||||| || ||| ||||| || | || | Sbjct 555 AGAAGATGATCGGCATCTCCCAGGGCTGGAAACTCCACGGCGCCATCCTGACGGCAGAAC 496 Query 29611 GCAAACTGGCTGAGGGAGTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTG 29670 |||| | || ||||| ||| ||||||| | || ||||| |||||||| |||||||| | Sbjct 495 GCAAGTTAGCCGAGGGTGTATTGGTGCACAGCGGACAGCCGCTGATGGCGTGGTGCGTAG 436 Query 29671 GCAATGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGC--GG 29728 ||||||| ||| ||||| ||| |||||| | | ||||| ||||| || ||| || Sbjct 435 GCAATGCGAAGGTAGAGCCGCGAGGCAACGCCGTGATGATTACAAAACAAGC-AGCAGGG 377 Query 29729 ACGGGGGAAAATTGACCCGCTGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAA 29788 ||||| || || ||||||||||||||| || || || || | |||||||| |||| Sbjct 376 ACGGGA-AAGATCGACCCGCTGATGGCGACGTTTAACGCTGTGACGCTGATGTCAATGAA 318 Query 29789 TCCGG 29793 |||| Sbjct 317 CCCGG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185251656729688