Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq409 147 5e-30 seq867 132 1e-25 seq482 114 3e-20 >seq409 Length=48402 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || ||||| || || || || || || || || || || Sbjct 48221 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCG 48162 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||||||||| || ||||| |||||||| |||||||| || Sbjct 48161 GCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTC 48102 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || || || || || ||||| || || || || || || Sbjct 48101 ACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTGAGAGTC 48042 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| ||||||||| || Sbjct 48041 TTGACAAAGATCTGCATTGTG 48021 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || |||||||| || | ||| ||||||||||| || ||||| |||||||| Sbjct 48401 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48342 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||||||| || |||||||| | |||||| || || || || | ||| || ||||| Sbjct 48341 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 48282 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| | || || || ||||||||||| Sbjct 48281 CCAGGCGGAGTCTTCACTAATATCTGCAT 48253 >seq867 Length=9987 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||| ||||| || || || || || || || || || || || || ||||||||||| || Sbjct 1681 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 1622 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 ||| || | ||| |||||||| || || ||||| || || || || || || |||||||| Sbjct 1621 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 1562 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||| | |||||| ||| || || || || || || || || || || || ||||| || Sbjct 1561 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 1502 Query 104548 AAATATCTGCATTTTGTGTAC 104568 || || |||||||||| ||| Sbjct 1501 GAAGATTTGCATTTTGTCTAC 1481 >seq482 Length=60659 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| ||| | || || | ||| | || || || |||||||| || || ||||| Sbjct 60500 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60559 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || || || || || || || || || |||||||| || | ||| ||||||||||| Sbjct 60560 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60619 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||| |||||||| |||||||| || |||||||| Sbjct 60620 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTC 60657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380003891876