Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq409 107 2e-18 seq867 105 6e-18 >seq409 Length=48402 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 48233 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA-AAGTGTC-CTGCCATCCT 48176 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 48175 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 48116 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | || ||||||| Sbjct 48115 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTT 48056 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || ||||| |||||||| ||| Sbjct 48055 TCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 48021 >seq867 Length=9987 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||||| ||||| || ||||||||||| | | | | | ||||| Sbjct 1698 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 1639 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || |||| | |||||||||||| ||| | | ||||||||| Sbjct 1638 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 1579 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 |||||| ||| | | | |||||||| | || |||| || | || |||||||| Sbjct 1578 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 1519 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || ||||| |||||||| || || ||||| ||||| Sbjct 1518 CCCGTGAGGGTTTTCACGAAGATTTGCATTTTGTCT 1483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244797903247