Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq867 123 6e-23 seq775 102 2e-16 seq409 91.5 3e-13 >seq867 Length=9987 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||| | |||| |||||||| || ||||| || || || | ||| || | || || | Sbjct 1700 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 1641 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 | | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | Sbjct 1640 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 1581 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 |||||||||| || || ||||| || | ||| | || || || |||||||| || | Sbjct 1580 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 1521 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||| || || || || ||||| || |||||| ||| Sbjct 1520 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 1485 >seq775 Length=79885 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAG 269229 |||||| ||||| ||||||||||| || ||||| || |||| || || | ||| Sbjct 8947 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 9006 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || | | ||| | | ||||||||| | ||||||||| || || || ||| |||| || Sbjct 9007 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 9066 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG----AATCC 269345 || ||||||||||| ||||| ||| | ||||| ||| | || || ||| || | Sbjct 9067 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 9126 Query 269346 A--GAAGA-CAATATTTTTGCCATCGATGATGATTTTTAA 269382 | ||||| ||| | |||| | |||||| |||||| ||| Sbjct 9127 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 9165 >seq409 Length=48402 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 48170 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 48111 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || || || || || ||||| Sbjct 48110 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCT 48051 Query 288448 GTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||||||||| || ||||||||| || Sbjct 48050 GTGAGAGTCTTGACAAAGATCTGCATTGTG 48021 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 48398 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 48339 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || | ||||| ||||| || Sbjct 48338 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 48279 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 | | ||||||| || ||||||||||| Sbjct 48278 GGCGGAGTCTTCACTAATATCTGCAT 48253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179635552440466