Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq297 111 2e-19 seq409 105 7e-18 seq867 104 2e-17 seq482 96.9 3e-15 >seq297 Length=401717 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 |||| || ||||||||||| || || | || || | ||| |||| | ||| ||||| Sbjct 220554 ACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGC 220495 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 ||||| |||||| |||||||| | |||| ||||| ||| || || ||||||||| Sbjct 220494 AGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATG 220435 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||| ||||||| ||||| |||||||| ||||| Sbjct 220434 CGTCCTTGTACATCATGTAGGGGGTGCCTGTTTC 220401 >seq409 Length=48402 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || |||||||||||||| | | || | | || Sbjct 48236 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 48177 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| ||||||| |||||||| || |||||||| ||||| || || Sbjct 48176 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 48117 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 48116 TGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTT 48057 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || || || || |||||| Sbjct 48056 TTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 48024 >seq867 Length=9987 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || || ||||||||||| | || ||| | | | || || ||||| || || || | Sbjct 1681 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 1622 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| || |||||||| || || ||||| ||||| || ||||| ||||| ||||||| Sbjct 1621 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 1562 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | ||||| | ||||| || | || | ||| || || || | ||||| || Sbjct 1561 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 1502 Query 64432 GAAAATTTGCATTTT 64446 ||| ||||||||||| Sbjct 1501 GAAGATTTGCATTTT 1487 >seq482 Length=60659 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || |||||||||||||| | | || | | || Sbjct 60515 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 60574 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| ||||||| |||||||| || |||||||| ||||| || || Sbjct 60575 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 60634 Query 64352 TGTATTTTTTGCTTTACA 64369 || || ||| ||| ||| Sbjct 60635 TGGATCTTTGCCTTCACA 60652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637011786680