Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq867 98.7 9e-16 seq297 93.3 4e-14 >seq867 Length=9987 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 |||||| ||||| || ||||| || ||| | ||| || | |||||||| ||| | Sbjct 1681 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 1622 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 |||| || ||||| || |||||||||||||| || ||||| ||||| || | Sbjct 1621 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 1562 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | ||| || |||| ||| || || || || | ||||| || || || ||||| || Sbjct 1561 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 1502 Query 45329 AAAAATTTGCAT 45340 || |||||||| Sbjct 1501 GAAGATTTGCAT 1490 >seq297 Length=401717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 ||||||| || || || |||||| | ||||| ||||| ||||||||||| | ||| ||| Sbjct 220399 TCGAAACAGGCACCCCCTACATGATGTACAAGGACGCATGCAACAGGAAGAGCAACCAGC 220458 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 |||||||| | || || |||||||| |||| |||||| | || |||| | | Sbjct 220459 AAAACTTGGGGATCATTCGATCGAGTAATCTGTGCTGCGAAATCGTGGAGTACACCAGTC 220518 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 |||| | || || ||||| || ||||| || Sbjct 220519 CCGACGAGGTCGCTGTGTGCAACTTGGCCTC 220549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996154400120