Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq409 145 2e-29 seq867 111 4e-19 seq482 109 1e-18 >seq409 Length=48402 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| || | |||||| |||| | ||||| ||||| ||||||||| Sbjct 48227 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 48168 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || |||||||||||||| || ||| ||| ||||| ||||| |||||| Sbjct 48167 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 48108 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| ||||| ||| |||| || || ||||||| || || || || || ||| Sbjct 48107 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 48048 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || Sbjct 48047 AGAGTCTTGACAAAGATCTG 48028 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||||||||| ||||| || |||||||||||||| || ||| ||| ||||| ||||| Sbjct 48402 CAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTG 48343 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| |||||| ||||| ||| |||| || || || ||||| ||||| ||||| Sbjct 48342 GATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTT 48283 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | |||| ||||| || || || Sbjct 48282 GCCAGGCGGAGTCTTCACTAATATCTG 48256 >seq867 Length=9987 Score = 111 bits (122), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| |||| |||||| || | | ||||| ||||| || ||||| Sbjct 1693 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 1634 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| ||||| || ||||||||||| || || ||| ||||| || || || || Sbjct 1633 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 1574 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||||| ||| || | | || || |||| |||||| || || ||||| Sbjct 1573 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 1514 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| |||||||| || ||||| |||||| Sbjct 1513 GAGGGTTTTCACGAAGATTTG---CATTTT 1487 >seq482 Length=60659 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | || || || |||||||| || | |||||| |||| | || Sbjct 60505 TCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGT 60564 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| ||||| ||||||||||| ||||| || |||||||||||||| || ||| ||| || Sbjct 60565 CCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCC 60624 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGA 199562 ||| ||||| |||||| |||||| ||||| Sbjct 60625 TTCCTTATCCTGGATCTTTGCCTTCACATTTTCGA 60659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902764148549