Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq297 331 1e-85 >seq297 Length=401717 Score = 331 bits (366), Expect = 1e-85 Identities = 1001/1531 (65%), Gaps = 34/1531 (2%) Strand=Plus/Plus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 |||||||| ||||||||||| |||| | |||||| || | | ||| || ||| | Sbjct 60225 CCCTTATCGTTCGTAATCGTGATCTGGTTGGATTTCCCAGTGTTCTTTTCGGTGGCAGTG 60284 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| || ||||||||||||| |||||| | || | ||||| || || || | Sbjct 60285 ACGTTCATGATGCCATTTGCATCAATATCGAAGGTGACTTCGATTTGAGGG--ACGCCAC 60342 Query 6755 GGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 || | ||| ||| || || || | || | || | | |||||||| | | | Sbjct 60343 GGGG-GGCAGGAGGGATTCCATCCAAGTGGAACTTGCCCAAGAGGTTGTTATCCTTGGTC 60401 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 | |||||| |||||| |||||| ||| ||| | || || || ||| || Sbjct 60402 ATGGCACGTTCTCCTTCAAAGACTTGAATCAACACTCCTGGCTGGTTGTCTGCGTAGGTG 60461 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 | ||||| || ||||| | || || || || || | | || | | ||||| Sbjct 60462 GTGAAGACCTGGGACTTCTTGGTGGGGATGGTGGTGTTGCGCTCGATCAACTTCGTCATG 60521 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCT 6991 | || || ||| || | ||||| || || || | ||||| | || | || || Sbjct 60522 ACGCCTCCAGCAGTCTCCAACCCAAGCGAGAGTGGCGCTACGTCTAGCAGCAGAAGATCC 60581 Query 6992 TGAAC---AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || ||| | ||| | |||| | | |||||||| || || | || |||||| Sbjct 60582 TGTACCTGAGAGTTGTTGAC---ACCCTTGAGAATGGCGGCCTGCACTGCAGCACCGTAT 60638 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--G 7106 || || |||||||| ||||| || | | || || | || || | ||| | Sbjct 60639 GCCACGGCCTCATCCGGGTTGATGGAACGGCAGGGCTCCTTGTCATTGAAGAACTCCTGG 60698 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 |||| | || ||||| || || || || || || || |||||||| || | || | || Sbjct 60699 ATAA--TCTGCTGAATCTTGGGAATACGGGTAGACCCTCCGACCAAGACAACCTCGTGCA 60756 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | | || ||||| | ||| | || || || || | | | | | | Sbjct 60757 CACTGCGCTTGTCGATGGCAGCGTCCTTCAACACCTTCTCCACTGGCACAAGAGAACTCC 60816 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 ||| | ||||| || || ||||| |||||||| |||| || ||| | |||||| Sbjct 60817 TGAAGTAATCCATGCAGAGCTCCTCGAAACGTGCCCGGGAAAGAGATACGGAATAATCAA 60876 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCG-TCGAAGATAACGTTC 7343 ||| || | | |||||| || || ||||| | || ||| | |||| | || | Sbjct 60877 TGCCTTCAAACAGCGAATCGATCTCGATGGTGGCCTGGGTGCTGCTCGAG---AGGGTGC 60933 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| || | |||||| || || | || | || ||||| ||| ||| || || Sbjct 60934 GCTTCGCTCTCTCACATTGAGTGCGCAGGCGTCTTAGAGCACGGCTGTTGCCGCTAAGAT 60993 Query 7404 CTTT-CTT--ATGTTTACGTTTAAACTCTT-CAG--AGAAGTGTCGAAGGAGTCTCGAAT 7457 | || ||| || || || || || || | || |||||| | |||||| | Sbjct 60994 CCTTGCTTCGATTCTTCCGCTTGAAATCCTGCATGCAGAAGTCC---ACGAGTCTGTTGT 61050 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || |||||||| || ||||| || || || || ||||| |||||||| || Sbjct 61051 CGAAGTCCTCTCCACCCAAATGGGTATCACCAGCTGTAGCCTTGACCTCAAAGATGCCGT 61110 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | || ||||||||||| || |||||||||| ||| || ||||| || | Sbjct 61111 CCTCGATGGTAAGCAGGGAAACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACAT 61170 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | || | | | ||||| || ||||| || || || || || ||||| || || | Sbjct 61171 TCATTTCACCCTGTCCCTTCTTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGT 61230 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 |||| ||||||||| |||||| || |||||||| | || || || || || || || | Sbjct 61231 TAATGATACGAAGAACGTTCAGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCT 61290 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | |||||||| ||||| ||||| || || | || || ||| | |||| || || | Sbjct 61291 GAGAATCGTTGAAGTATGCCGGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAACGA 61350 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 |||| || || || || ||||| || || ||||| | ||||| || || | || Sbjct 61351 ACGACTCGGCAATTTCCTTCATCTTCACCAGCACCATGGCGGAAATTTCCTCCGGATGAA 61410 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | ||||| |||| | | | |||||||| | || ||| || | || | Sbjct 61411 AAGTCTTCGTAGCACCTTGGTAGTTCACTTCAATAAGTGGCTTACCCCCGCTTCCAGCCT 61470 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | ||| | ||| ||| | ||||| || || ||| |||| ||||| | || Sbjct 61471 TGACCGTGAACGGCCAGTGCTTCATGTCCGACTGCACCGCGGGGTCATCGAACTTCCGTC 61530 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || |||||||| || |||||||| ||||||| ||||||| | || ||||| |||| Sbjct 61531 CAATGAGACGCTTCGCGTCAAAAACGGTGTTTTCGGGGTTCCTCGCCACCTGGTTTTTCG 61590 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | ||||| || | || || || | || || || ||||| || || ||||| |||| Sbjct 61591 CGGCGTCGCCCACCAGTCGCTC---TGTGTCGGTGAATGCGACATAGGAAGGGGTGGTTC 61647 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 || || ||||||||||| || || || |||| ||||| | ||| || || ||||| | Sbjct 61648 TGTTACCCTGGTCGTTCGCTATGATCTCGACGCCTTCGTTCTTCCATACACCCACGCAAG 61707 Query 8118 AATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || || || | || || || | ||| Sbjct 61708 AGTATGTGGTGCCAAGGTCGATGCCAACTGC 61738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122899867480