Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq297 437 1e-117 seq409 167 3e-36 seq867 165 1e-35 seq667 163 4e-35 seq482 118 1e-21 >seq297 Length=401717 Score = 437 bits (484), Expect = 1e-117 Identities = 1053/1582 (67%), Gaps = 15/1582 (1%) Strand=Plus/Minus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| ||||| | || || || ||||| || || ||||||||| | || || | || | Sbjct 61734 TTGGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCG 61675 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || |||| ||||| || ||| | || || || || || || || || || || | Sbjct 61674 AGATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACA 61615 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || || || || || ||||| ||||| ||| || | |||||| || || | Sbjct 61614 CAGAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCG 61555 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||||||||||||||| ||||| || ||||| || || || || | Sbjct 61554 TTTTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACA 61495 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | || | || | | |||||| | ||| | || Sbjct 61494 TGAAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGA 61435 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | || |||| | ||| ||| ||| || |||||||| | |||||| || | | Sbjct 61434 ACTACCAAGGTGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 61375 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || || ||| | || ||| || || || || ||| | || | Sbjct 61374 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 61315 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 |||| || ||||||| ||||| || || ||||| ||||||||||| | ||||||||| Sbjct 61314 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 61255 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| |||| | || || || || || || || || || || || |||||||||| Sbjct 61254 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 61195 Query 195843 ACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| ||||| | ||||| || | |||||||| || || Sbjct 61194 ACAAGAAG--GGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATT 61137 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || || || || |||||||| |||||||| Sbjct 61136 TGATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGA 61077 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| | ||||| || || ||||| | || | | | | || || | || | Sbjct 61076 TACCCATTTGGGTGGAGAGGACTTCGACAACAGACTCGTG-GACTTCTGCATGCAGGATT 61018 Query 196020 TCCGTCGAAAGAAT--AAGAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 || || |||||| ||| ||| || || || || | ||||| | || || Sbjct 61017 TCAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGC 60958 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||| |||||| | || || || || ||||| | | || | | | |||| Sbjct 60957 GCACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGA 60898 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | |||||| ||||||| || ||||| | | | || || |||| |||||||| || | Sbjct 60897 TCGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGG 60838 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 || | | |||| || |||| | | | | || || || | || | |||| Sbjct 60837 AGCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACG 60778 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | || || ||| | || | || ||||| | || ||||| || |||||||||| Sbjct 60777 CTGCCATCGACAAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 60718 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 | |||||||| ||||| | || || ||||||||| | || || | | || Sbjct 60717 CCAAGATTCAGCAGAT--TATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 60660 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||||||||| || || || || ||||| || || ||||| || |||||| ||||| Sbjct 60659 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 60600 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 |||| | | || || ||||||||||| || || || || || | || || || | Sbjct 60599 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 60540 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| || | || || | ||||| || || || || || Sbjct 60539 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 60480 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| || ||||| | || || | || || || ||||| || |||||||| | Sbjct 60479 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 60420 Query 196615 TGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | || || | ||||||||| | || | || | ||| | ||| | Sbjct 60419 TGAAGGAGAACG-TGCCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATG 60361 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| ||| | || || || || || | || ||||||||| || |||| Sbjct 60360 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 60301 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| || | |||||||| || || ||| |||| ||||| | |||| || Sbjct 60300 ATGGCATCATGAACGTCACTGCCACCGAAAAGAACACTGGGAAATCCAACCAGATCACGA 60241 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 |||| || || ||||| || || || || ||||| || || ||||| ||| || | Sbjct 60240 TTACGAACGATAAGGGCCGCCTGTCACAGAGTGAAATCGACCGCATGGTGGCAGAAGCTG 60181 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| || || ||||| Sbjct 60180 AGAAGTACAAGGCGGAGGACGA 60159 >seq409 Length=48402 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || ||||| || || || || |||||| | ||| Sbjct 48025 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 48084 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 48085 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 48144 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 48145 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 48204 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 48205 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 48236 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | |||| || || ||||| | || |||||| | ||| Sbjct 48253 ATGCAGATATTAGTGAAGACTCCGCCTGGCAAGACAATCACATTGGACGTTGAGCCATCA 48312 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 48313 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 48372 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCT 172010 || || || |||||||| || || ||||| Sbjct 48373 CAGCGTCTCATTTTTGCCGGCAAGCAGCT 48401 >seq867 Length=9987 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||||| || || ||||| ||||| || || || ||| | || Sbjct 1490 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 1549 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || || ||||| |||||||||||||| || |||||| Sbjct 1550 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 1609 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| || ||||| | |||||| | ||||||||| Sbjct 1610 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 1669 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| ||||| ||| Sbjct 1670 ATCCAGAAGGAAAGCACTCTTCAC 1693 >seq667 Length=108239 Score = 163 bits (180), Expect = 4e-35 Identities = 409/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||| | || || |||||||| ||||| || || | | | | | || Sbjct 24511 ATTGGCATTGATCTCGGTACCACTTACTCGTGTGTGGGGGTGTACCGCCACGGAAGAGTT 24570 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| |||||||||||||||||||| | ||||| ||||| | ||| | ||| Sbjct 24571 GATATTATTCCGAATGACCAAGGAAACCGCATTACTCCTAGCTACGTGTCTTTTTCCGAT 24630 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||| | |||| || || || || || | |||| ||||| ||||| Sbjct 24631 GATGAAAGGAAAATTGGGGAAGCTGCCAAGAACGACGCAGCCGATAACCCGTCAAATACC 24690 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | || |||| |||||| || || || ||| || || |||| ||| ||| Sbjct 24691 ATTTTCGACGTGAAGCGCCTCATGGGGCGCCGTTTCAACGAGCCACAAGTGCAATCCGAC 24750 Query 195542 ATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || || |||| | ||||||| | || | | || ||||| |||| | Sbjct 24751 ATGAA--ACTGCTGCCTTATGAGATCATTAA---TAAAGATGGAAAGCCCTACATTAGAG 24805 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGA 195659 | | |||| || | |||| | ||||||| || || | || | ||||||||| Sbjct 24806 TCAATGTTCAGGGCCAACAGAAGGAGCTTGCTCCAGAGGAGGTGTCTGCCATGGTGTTGG 24865 Query 195660 TTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||| | || || | || | |||| | | || ||| |||| ||||| Sbjct 24866 GCAAGATGAAGCAAGTGGCCGAGAACTATT-TGGGAAGAGAAGTAAAAAATGCGGTTGTT 24924 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||| ||||||| || || ||||||||||| | || || Sbjct 24925 ACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCAGGCGCAATC 24984 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| || || ||| | | || ||||||| || || |||||||| ||||| ||||| Sbjct 24985 GCGGGGCTTAA-TGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATTGCATATGG 25043 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||| |||||| || || | | ||| ||| ||||| ||||||||||| Sbjct 25044 ATTGGACAAG---AAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGTGGTGGTAC 25097 Query 195898 GTTTGATGTCTC 195909 || |||||||| Sbjct 25098 CTTCGATGTCTC 25109 >seq482 Length=60659 Score = 118 bits (130), Expect = 1e-21 Identities = 126/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 171929 TCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGAC 171988 |||| || | || || ||||| || ||||||||||||||||| || |||||||| || | Sbjct 60659 TCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTC 60600 Query 171989 TTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAA 172048 | |||||||| || || ||||| || ||||| | || || ||||||||||| |||| | Sbjct 60599 TCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGA 60540 Query 172049 AGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGCAA 172093 ||||||| || || || | ||||| | || || || || |||| Sbjct 60539 AGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGG-GCAA 60496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657852145569840