Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq409 136 4e-27 seq867 120 3e-22 seq482 98.7 9e-16 >seq409 Length=48402 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || ||||| ||||| || || || | |||| Sbjct 48022 ACAATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTG-AGCC 48080 Query 24761 A-CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | || || | |||| || || ||||||||| || || ||||| || ||||| || Sbjct 48081 ATCAGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 48140 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| || ||| | || |||||||| || |||||||||||| || | | || ||||| Sbjct 48141 TCAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTA 48200 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| ||||| || || || || ||||| |||| ||| | || ||| Sbjct 48201 CAACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGGC 48252 >seq867 Length=9987 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || ||||| || ||||| || || || | | Sbjct 1490 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 1549 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| || ||||||||||| ||||| || || || ||||| Sbjct 1550 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 1609 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || |||||||| |||||| ||| | | | || ||||| ||| Sbjct 1610 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 1669 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||| || || |||||||| Sbjct 1670 ATCCAGAAGGAAAGCACTCTTCACTTGGT 1698 >seq482 Length=60659 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||| || || ||||| || ||||| ||||| || ||| | || |||||||| || Sbjct 60643 AAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAA 60584 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 |||||||||||| || | | || ||||| |||||||| ||||| || || || || Sbjct 60583 GCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCA 60524 Query 24907 CTTGGTGTTGCG 24918 ||||| |||| Sbjct 60523 TTTGGTTCTGCG 60512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890587221160