Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq409 159 7e-34 seq867 118 2e-21 seq482 109 1e-18 >seq409 Length=48402 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||||||||||||| || || || || || || ||||| || || |||||||| Sbjct 48251 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 48192 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || || || || || || || ||||| || || | || ||||| ||||| Sbjct 48191 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 48132 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || |||||||| || |||||||| || ||||| || || || Sbjct 48131 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 48072 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || || || ||||| | ||||| ||||| ||||||||| Sbjct 48071 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 48024 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || || ||||| || || | || ||||| ||||| || ||||||||||| || Sbjct 48401 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48342 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| || |||||||| || ||||| || || || ||||| || || |||||| Sbjct 48341 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 48282 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | | ||||| || ||||||||||| Sbjct 48281 CCAGGCGGAGTCTTCACTAATATCTGCAT 48253 >seq867 Length=9987 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| ||||| ||| ||||| || || ||||| || || | || || || || Sbjct 1698 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 1639 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||||||||| || || || | || ||||| || || || |||||||| ||||| Sbjct 1638 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 1579 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || ||||||||||| || ||||| ||| || || |||| || || || || Sbjct 1578 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 1519 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | || || || || || |||||| Sbjct 1518 CCCGTGAGGGTTTTCACGAAGATTTGCATT 1489 >seq482 Length=60659 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||||||||| || || || || || || ||||| || || |||||||| Sbjct 60500 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60559 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || || || || || || || ||||| || || | || ||||| ||||| Sbjct 60560 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60619 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 || ||||||||||| || |||||||| || |||||||| Sbjct 60620 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTC 60657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981811513162733