Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq409 107 2e-18 seq867 100 3e-16 seq297 100 3e-16 seq482 84.2 2e-11 >seq409 Length=48402 Score = 107 bits (118), Expect = 2e-18 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 48230 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 48174 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 48173 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48114 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| || || | || | |||||| Sbjct 48113 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTC 48054 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || |||||||| Sbjct 48053 CCTGTGAGAGTCTTGACAAAGATCTGCAT 48025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 48401 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48342 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| ||||| | |||| || ||| Sbjct 48341 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 48282 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || | | |||| || || || ||||||||| Sbjct 48281 CCAGGCGGAGTCTTCACTAATATCTGCATG 48252 >seq867 Length=9987 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||| || || ||| |||| || |||||||| || || || |||||||||||| Sbjct 1644 TCCTCGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTG 1585 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || || | ||||||||||| | |||| | Sbjct 1584 TCTTGGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATG 1525 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| || ||||| Sbjct 1524 GTTTTCCCCGTGAGGGTTTTCACGAAGATTTGCAT 1490 >seq297 Length=401717 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| | |||||||| || ||| || || | ||||||| ||||| ||| |||| Sbjct 220549 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 220490 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| || || || | |||| ||| | || |||||||| |||||||| |||||| Sbjct 220489 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 220430 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 ||||||| |||||| || ||| ||||| | ||||| || || Sbjct 220429 TTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCA 220387 >seq482 Length=60659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 60521 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 60577 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 60578 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 60637 Query 133572 ATCTTT 133577 |||||| Sbjct 60638 ATCTTT 60643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413264678280