Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq366 93.3 1e-15 seq334 93.3 1e-15 seq825 91.5 5e-15 >seq366 Length=341932 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 17241 GCTGA--TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 17184 Query 2829 CCGGGCTTCAGC 2840 ||||| ||||| Sbjct 17183 CCGGG--TCAGC 17174 >seq334 Length=95426 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 39235 GCTGA--TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 39178 Query 2829 CCGGGCTTCAGC 2840 ||||| ||||| Sbjct 39177 CCGGG--TCAGC 39168 >seq825 Length=71156 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 11583 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 11640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849383826315