Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq409 105 6e-18 seq867 98.7 9e-16 seq482 84.2 2e-11 >seq409 Length=48402 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||| | || |||||| |||||||||||||| | Sbjct 48251 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 48192 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||||||||| || ||||| || | |||||||| || | |||| Sbjct 48191 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 48132 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| ||||||| ||||| | || | | || || | || || Sbjct 48131 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 48072 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| || || ||||| || || | ||| || ||||| ||||||||| || Sbjct 48071 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 48021 >seq867 Length=9987 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | || || ||||| || ||||||||||| | | ||| | | | || || Sbjct 1698 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 1639 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || || || |||| |||||||| || | |||| || |||||||| | Sbjct 1638 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 1579 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | || | | || || | ||||| |||| |||||| ||||| Sbjct 1578 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 1519 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | |||||||| || || |||||| ||| Sbjct 1518 CCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 1485 >seq482 Length=60659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || |||| | || |||||||| | || |||||| |||||||||||||| | Sbjct 60500 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60559 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||||||||| || ||||| || | |||||||| || | |||| Sbjct 60560 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60619 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 | || ||||| ||| ||||||| ||||| Sbjct 60620 ATGCCTTCCTTATCCTGGATCTTTGCCTTCA 60650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786573254760