Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq409 105 6e-18 >seq409 Length=48402 Score = 105 bits (116), Expect = 6e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| |||| |||||||| | || || || || ||||| ||||| || Sbjct 48253 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 48194 Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | || || ||||| || ||||| ||||||||||||| ||||| || Sbjct 48193 AAAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGA 48135 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | || || ||||| |||||| |||| |||| | || |||| |||| || Sbjct 48134 GGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGC-TC 48076 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||| || | ||| || || ||||| || |||||||| ||||| Sbjct 48075 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 48025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927941926664