Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq297 282 1e-70 seq409 176 1e-38 seq867 131 5e-25 seq482 123 8e-23 seq667 96.9 1e-14 seq966 89.7 2e-12 seq635 86.0 2e-11 >seq297 Length=401717 Score = 282 bits (312), Expect = 1e-70 Identities = 940/1447 (65%), Gaps = 19/1447 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || ||||| || | ||| ||| | || || | || || Sbjct 61732 GGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAG 61673 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 61672 ATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACA 61613 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| || | || || | || ||||| || | || || || |||| || ||| Sbjct 61612 GAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTT 61553 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| || ||||| || ||||| | | || |||| | || || || | Sbjct 61552 TTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATG 61493 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || || || | | ||| | ||| ||| ||||||| || | Sbjct 61492 AAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAAC 61433 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTAGTTA 349562 || |||||| || || || |||| | ||| || ||||||| | ||||| | || | Sbjct 61432 TACCAAGGTGCTACGAAGAC--TTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 61375 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||||||||| || | | | || || ||| | || || |||||||| | Sbjct 61374 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 61315 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 |||| || || || || ||| | ||||| || ||||| || || |||| ||||||| Sbjct 61314 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 61255 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || ||||| || || || |||||||| || || ||||| || | Sbjct 61254 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 61195 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | |||| ||| | || || || || | |||||||| || |||| Sbjct 61194 ACAAGAAGGGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATTTG 61135 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || || || || ||||| || || || || |||||||||| Sbjct 61134 ATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGATA 61075 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG--TTAAAGAATT 349920 | ||| | |||||||| || || || || | |||| | | || || | | || || Sbjct 61074 CCCATTTGGGTGGAGAGGACTTCGACAACAGACTCG--TGGACTTCTGCATGCAGGATTT 61017 Query 349921 TAAGCG--TCAAGCTAA-AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | ||| || | | || | || | | ||||| | Sbjct 61016 CAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGCG 60957 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| ||||| | || ||||| || | || | ||||| || | || || || Sbjct 60956 CACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGAT 60897 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| || ||| |||| |||| | |||| || | || || || || || || Sbjct 60896 CGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGGA 60837 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || |||||| || || | | | || ||||| || || || || || || Sbjct 60836 GCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACGC 60777 Query 350158 AAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || | || ||| || | || || || || || || || ||||| ||||||| Sbjct 60776 TGCCATCGAC-AAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 60718 Query 350217 CAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 | || |||| ||| | |||| ||||| || |||| ||| || || | | || || Sbjct 60717 CCAAGATTCAGCAG--ATTATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 60660 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || ||||| |||||||| || ||||| | ||| | || Sbjct 60659 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 60600 Query 350335 TAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATT 350394 || | ||| | | | ||||| | || ||||| ||| | ||||| |||||||| || Sbjct 60599 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 60540 Query 350395 AGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAA 350454 || ||| |||| | || ||||| | || | || | || | || || || Sbjct 60539 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 60480 Query 350455 AAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATT 350514 |||||||| || | || | ||||| || ||||||| || |||||||| || Sbjct 60479 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 60420 Query 350515 TGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG-TG 350573 |||||| |||||||| || || ||||| || ||||| || || | || | || Sbjct 60419 TGAAGGAGAACGTGCCATGACCAAGGATAACAA-CCTCTTGGGCAAGTTCCACTTGGATG 60361 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 ||| || || || | || || ||||| || |||||| | |||||||||||| ||| Sbjct 60360 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 60301 Query 350634 ATGGTAT 350640 |||| || Sbjct 60300 ATGGCAT 60294 >seq409 Length=48402 Score = 176 bits (194), Expect = 1e-38 Identities = 186/244 (76%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 |||||||| | ||| ||||| | || | ||||| | |||||| || ||||| || || Sbjct 48266 ACTAATATCTG-CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTG 48208 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||| || |||||||| | ||| | ||||| || || || || || ||||| || ||||| Sbjct 48207 AATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACG 48148 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 ||||||||||||||||| ||||| |||||||| || || || || ||||| || || | Sbjct 48147 CTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGT 48088 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 ||| ||||| ||||| || || |||| || || || || || || || ||||| ||||| Sbjct 48087 ATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTG 48028 Query 140735 CATT 140738 |||| Sbjct 48027 CATT 48024 Score = 111 bits (122), Expect = 5e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||||| Sbjct 48401 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48342 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| || || | ||| ||||| ||||| || | ||| | |||||| Sbjct 48341 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 48282 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | | || || || || |||||||| Sbjct 48281 CCAGGCGGAGTCTTCACTAATATCTGCAT 48253 >seq867 Length=9987 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || || || || || ||||| || | || | |||||| || | Sbjct 1696 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 1638 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || | Sbjct 1637 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 1578 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || |||||||| || || | ||| || || || || || || || | || || | Sbjct 1577 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 1518 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || || || |||||| Sbjct 1517 CCGTGAGGGTTTTCACGAAGATTTGCATT 1489 >seq482 Length=60659 Score = 123 bits (136), Expect = 8e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| || ||||| || |||||||| | ||| | ||||| Sbjct 60515 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 60574 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||| Sbjct 60575 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 60634 Query 140646 TGAATTTTAGCTTTTACATTATC 140668 || || || || || ||||| || Sbjct 60635 TGGATCTTTGCCTTCACATTTTC 60657 >seq667 Length=108239 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||||| || | || |||||| || | || || ||||| || | ||||| || Sbjct 24856 ATGGTGTTGGGCAAGATGAAGCAAGTGGCCGAGAACTATTTGGGAAGAGAAGTAAAAAAT 24915 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 24916 GCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCA 24975 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || |||||| | ||||| | | || | ||||| |||||||| || || ||| Sbjct 24976 GGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATT 25035 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 |||||||| | || || || ||| || || | ||| | | | ||| | ||| Sbjct 25036 GCATATGGATTGGACAA---GAAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGT 25089 Query 349790 GGTGGTACTTTTGATGTATC 349809 |||||||| || ||||| || Sbjct 25090 GGTGGTACCTTCGATGTCTC 25109 >seq966 Length=237506 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || ||| || || Sbjct 97572 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCAAGTCCGCG 97631 Query 423824 TGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||||| |||||| |||||||| Sbjct 97632 TGGGTTCAAATCCCACTTCGTGCATT 97657 >seq635 Length=268955 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC---GAAAGCCT 423821 |||| ||||||||||||||| |||||||| |||||||| || |||| ||| || Sbjct 203188 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGTTCCCCTGGTCGTGAAGACCG 203246 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| |||||||||||||||||| Sbjct 203247 CGTGGGTTCGAACCCCACTCCGTGCATT 203274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515230190496341