Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq297 102 9e-17 seq612 89.7 6e-13 >seq297 Length=401717 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 ||||||||| || | | || |||||| |||| || || || ||||||||||| | Sbjct 219745 GTCTTCAACGACGCCTCTCGCTACGTCGACCAAGGCGGCGGCAAGCGCAAGGGCAGCCTT 219804 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||| | ||||| ||||| | ||||| | |||||||| || | || ||| Sbjct 219805 GCAGTGTACGTGGAGCCCTGGCATTCAGACATCTTCGAGTTTCTGGATATCCGAAAAAAT 219864 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || || | || ||||||||| | | ||||| ||| | || |||||| ||||||||||| Sbjct 219865 CATGGGAAGGAGGAGATGCGCGCCAGGGACCTCTTTCCGGCCCTGTGGGTTCCGGACCTC 219924 Query 53693 TTCATG 53698 || ||| Sbjct 219925 TTTATG 219930 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 55699 CGTCCAGAATCTGG---AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755 ||| ||| |||||| ||||||| ||| |||||| |||| || ||||| ||||| Sbjct 221559 CGTGCAGCATCTGGCAGAGATTCCGGACGATCTAAAGGAGCTTTATCGCACGGTTTGGGA 221618 Query 55756 GATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTC 55815 ||| ||| || | |||| ||| | ||||| | | | | | |||||||| Sbjct 221619 GATAAAGCAGCGCAGCATTGTTGATATGGCGGTAGATCGCGCGCCCTTCGTAGACCAGTC 221678 Query 55816 CCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTT 55875 ||||||| | || ||| |||| |||||| | | || ||| | |||||||||| Sbjct 221679 CCAGTCTTTAAATATCCACATGCGGAATCCCACTTTCGCGAAGCTCTCGACGATGCACTT 221738 Query 55876 TTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| |||||| |||||||||||||| || |||||| | |||| Sbjct 221739 CCACGCGTGGAATTCCGGACTCAAGACGGGCATTTACTATTTAAGGAC 221786 >seq612 Length=48089 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| | ||||||||| || || | | | ||| ||||| Sbjct 44669 GTAAAGATGTAGCGGGGTGCAGACGCATCCTTCCCGCCCTCTTTTCTGGATCCGAACTGA 44728 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||||| |||| || || |||||| || ||||| ||| |||| | | Sbjct 44729 CCAACGGGCTCAAGGAAATTAAGATTGTTGCTTCCAACGAACCGCTGGGCCATGGTAATG 44788 Query 152149 ATCGTGCCCTGCA--GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || ||||| |||| ||| | |||||||||||||| ||||||| || | || | Sbjct 44789 ATGGTTTGCTGCAAAGACT-GCT-CGCCGTGGTGATACGCACTCTGCTCGGCAACATACC 44846 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG-AGACAGGCGTAAATC 152265 | | | ||||||||||||| || | | || |||||||||| |||| ||| | | | Sbjct 44847 CAGAGAGTTGCGCCACCTTCAGCTCGGCCTTCGTGTTCTTCTTGAAGAC-GGCAAACAGC 44905 Query 152266 ACCTTGCGCTG 152276 || |||||||| Sbjct 44906 ACTTTGCGCTG 44916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207470270600