Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq409 163 3e-35 seq867 138 1e-27 seq482 113 5e-20 seq297 107 2e-18 seq612 95.1 1e-14 >seq409 Length=48402 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || || || |||||||| || |||||| || Sbjct 48024 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 48083 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || || Sbjct 48084 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 48143 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 48144 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 48203 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 48204 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 48251 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | | |||||||| || || | || |||||| || Sbjct 48253 ATGCAGATATTAGTGAAGACTCCGCCTGGCAAGACAATCACATTGGACGTTGAGCCATCA 48312 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 48313 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 48372 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||| |||||||| || ||||| || Sbjct 48373 CAGCGTCTCATTTTTGCCGGCAAGCAGCT 48401 >seq867 Length=9987 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || || || ||| | Sbjct 1489 AATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTC 1548 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||| || |||||||| || ||||| || || || Sbjct 1549 GGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCA 1608 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || |||||||||| | ||||| | || || || Sbjct 1609 GCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAA 1668 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||||||||| Sbjct 1669 CATCCAGAAGGAAAGCACTCTTCA 1692 >seq482 Length=60659 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| ||||||| || || ||||| ||||| || |||||||| || ||||||||||| || Sbjct 60655 AAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCAT 60596 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||| || ||||| || ||||||| | || || | || || || | || ||||| Sbjct 60595 TTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGA 60536 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || || |||||| | || ||||||| || || || ||| Sbjct 60535 GTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAA 60496 >seq297 Length=401717 Score = 107 bits (118), Expect = 2e-18 Identities = 244/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGC 80783 || || || || || || || | | |||| |||||||| ||| ||| | | || ||| Sbjct 220738 TCCGCGAGCCCTTGCACACCCAAGCCGATGGGGCGGTGTCGCAGGTTGCTGTAGCG-GGC 220680 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || || | ||||| | || |||||||||| |||||||| || || || | ||| Sbjct 220679 TTCTGGGACGGGGTAGTAATTTCTATCGATGACACGGTTCAGATTCCGAGTCATGACCTT 220620 Query 80844 TGTAACATC-ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCG 80896 |||| | |||| | ||| |||||||| | ||| || ||| ||| | Sbjct 220619 CACAACAGCCATGA-GCTTCGCGAAGTCGAAGAGCTTCTTCTCGACATCCACGAATCGAG 220561 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | || || ||| |||| |||||||| || ||||| || | | || |||| |||| Sbjct 220560 GGAGAGACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGA 220501 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||| ||||| |||| || ||| | |||| ||||| |||||| ||| || Sbjct 220500 TTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGT 220441 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||||| |||||| ||||| || || |||| ||| || | ||||| | Sbjct 220440 TGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATAG 220381 Query 81077 CG 81078 || Sbjct 220380 CG 220379 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||||| | |||||| |||||||||||||| || ||||| ||| | |||| Sbjct 221792 GCCTGCGTCCTTAAATAGTAAATGCCCGTCTTGAGTCCGGAATTCCACGCGTGGAAGTGC 221733 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | ||||||||| | ||||| ||| |||| ||| || | |||||| ||||| Sbjct 221732 ATCGTCGAGAGCTTCGCGAAAGTGGGATTCCGCATGTGGATATTTAAAGACTGGGACTGG 221673 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT--TG-ACTTTTGTGGAATTTCC 80208 | ||| | | | |||||| ||||||| |||| ||| || || | | || ||| Sbjct 221672 TCTACGAAGGGCGCGCGATCTACCGCCATATCAACAATGCTGCGCTGCTTT---ATCTCC 221616 Query 80209 CATACTGTACGATACACCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || || ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 221615 CAAACCGTGCGATAAAGCTCCTTTAGATCGTCCGGAATCTCTGCCAGATGCTGCACGCTG 221556 Query 80266 CC 80267 || Sbjct 221555 CC 221554 >seq612 Length=48089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCG 32061 |||||||| ||| | | ||| | ||||||||||| | | || ||||||||||| Sbjct 44916 CAGCGCAAAGTGCTGTTTGCCGTCTTCAAGAAGAACACGAAGGCCGAGCTGAAGGTGGCG 44857 Query 32062 CAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAG 32121 || || || || || || || ||||| | || ||||||||||||||| ||| | ||| Sbjct 44856 CAACTCTCTGGGTATGTTGCCGAGCAGAGTGCGTATCACCACGGCGAGCAGTCTTTGCAG 44797 Query 32122 GGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAG 32181 ||||| | | | | || ||| || || || || || || || || || ||| Sbjct 44796 CAAACCATCATTACCATGGCCCAGCGGTTCGTTGGAAGCAACAATCTTAATTTCCTTGAG 44737 Query 32182 CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTAC 32241 || ||| ||||| || || | | || || |||||||| | |||| ||| Sbjct 44736 CCCGTTGGTCAGTTCGGATCCAGAAAAGAGGGCGGGAAGGATGCGTCTGCACCCCGCTAC 44677 Query 32242 ATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG--TCGGACGATGCGG 32299 ||||| || |||||||| | || ||| ||||| |||| | || || | Sbjct 44676 ATCTTTACAAAGCTCGCACCGTACACACGCCTCGTTTTC--CCCGAAGCCGATGACCCTC 44619 Query 32300 TGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGC 32359 ||||| ||||| | ||| || || ||| | |||||||| | |||| ||| || Sbjct 44618 TGCTCGAGTACCTCTATGAGGAGGGGCAGAAGATCGAGCCGAAATACTACGTTCCTGTCA 44559 Query 32360 TTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGT 32404 | || | | | || ||||| ||||||||||| ||||||| Sbjct 44558 TCCCCACCGTGCTTGTCAACGGCAGCGAAGGCATCGGCACGGGGT 44514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301510286640