Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq409 179 9e-40 seq867 143 6e-29 seq482 129 1e-24 >seq409 Length=48402 Score = 179 bits (198), Expect = 9e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 48227 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 48168 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| |||||||||||| Sbjct 48167 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 48108 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||||||||| || || ||||| || ||||| || || || || ||| Sbjct 48107 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 48048 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 48047 AGAGTCTTGACAAAGATCTGCATT 48024 Score = 113 bits (124), Expect = 1e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||||||| || || || || || || || |||||||||| |||||||| ||||| Sbjct 48402 CAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTG 48343 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||||| ||||| ||||||||||| || || ||||| || | ||||| ||||| Sbjct 48342 GATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTT 48283 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||||| || || | |||||| Sbjct 48282 GCCAGGCGGAGTCTTCACTAATATCTGCAT 48253 >seq867 Length=9987 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| || || |||||||| ||||||| |||||||| ||||| || ||||| Sbjct 1693 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 1634 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || || || || || ||||| |||| ||||||||||| ||||| || Sbjct 1633 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 1574 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||||||||| || || || || || || ||||| || || ||||| Sbjct 1573 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 1514 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | |||||||| Sbjct 1513 GAGGGTTTTCACGAAGATTTGCATTTT 1487 >seq482 Length=60659 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 60524 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 60583 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| |||||||||||| Sbjct 60584 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 60643 Query 211032 TGTTTCACGTTTTCGA 211047 ||||| ||||||| Sbjct 60644 GCCTTCACATTTTCGA 60659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133480011155