Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq867 120 7e-22 seq409 114 3e-20 >seq867 Length=9987 Score = 120 bits (132), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| | | || |||||||| || | Sbjct 1696 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 1638 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| || || | |||||| || | || || |||||||| ||||| | Sbjct 1637 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 1578 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | | || ||| ||| || || || || || ||||| | Sbjct 1577 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 1518 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| || |||||||||| |||||||| Sbjct 1517 CCGTGAGGGTTTTCACGAAGATTTGCATTTT 1487 >seq409 Length=48402 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||| || || ||||||||||| | | || || ||||| Sbjct 48236 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 48177 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || || | |||||| || | | || |||||||| || Sbjct 48176 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 48117 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| | || | | | ||||| ||| || || |||||||| ||| Sbjct 48116 TGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTT 48057 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||||||||| || |||| ||||||| Sbjct 48056 TTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 48024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153802365188737