Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq867 147 5e-30 seq409 127 4e-24 seq482 91.5 3e-13 seq775 86.0 1e-11 >seq867 Length=9987 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 282889 GTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||||| || | |||||||| || ||||||||||| || | || || | ||||||| Sbjct 1700 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 1641 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || ||||| || || || |||| ||| || || ||| |||||| || |||||||||| Sbjct 1640 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 1581 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 |||| || || ||||| | ||||| || ||||||| || || || || ||||| || | Sbjct 1580 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 1521 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| | || || ||||| || |||||||| Sbjct 1520 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTT 1487 >seq409 Length=48402 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| |||| | Sbjct 48251 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 48192 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 48191 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 48132 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||||||||| || || | ||||| || || || | || || Sbjct 48131 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 48072 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || || || | |||||| || || ||||||||| Sbjct 48071 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 48024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || |||||||| || | ||| || || ||| ||||| || ||||| || ||| Sbjct 48401 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 48342 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 |||||||| || || | ||||| || || || | || || || | ||||| ||||| Sbjct 48341 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 48282 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | | |||||| || ||||||||||| Sbjct 48281 CCAGGCGGAGTCTTCACTAATATCTGCAT 48253 >seq482 Length=60659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || || || || |||||||| |||| | Sbjct 60500 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60559 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 60560 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60619 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032 || || ||||| || ||||||||||| || || | |||| Sbjct 60620 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGA 60659 >seq775 Length=79885 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAG 230303 ||||||| ||||| ||||||||||| || ||||| | || || || | || Sbjct 8947 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 9006 Query 230304 AAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAA 230363 || | | ||| | | ||| ||||| | |||||||| || || || ||||| || ||| Sbjct 9007 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 9066 Query 230364 ACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 || ||||||||||| ||||| ||| | || || |||| | |||| || Sbjct 9067 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046722476051538