Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq867 134 1e-26 seq409 120 2e-22 seq482 84.2 2e-11 >seq867 Length=9987 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||||| ||||| |||||||||||||| | ||| | | | || || Sbjct 1698 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 1639 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || |||| |||||||||||| | || | |||||||| || Sbjct 1638 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 1579 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||| | || | ||||| || | | ||||| |||| ||| || || || Sbjct 1578 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 1519 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| ||||||||||||||||| Sbjct 1518 CCCGTGAGGGTTTTCACGAAGATTTGCAT 1490 >seq409 Length=48402 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||| ||||| || |||||| || ||||||||||| Sbjct 48255 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 48196 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || ||||||||||| |||||||| || | |||||||||||| | Sbjct 48195 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 48136 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | ||||| || | | || Sbjct 48135 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 48076 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 48075 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 48025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||| || | |||||||||||| | ||| | |||||||| ||| Sbjct 48402 CAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTG 48343 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| || | ||||| || | | || || |||| || || ||||| Sbjct 48342 GATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTT 48283 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | | |||||||| || || |||||| Sbjct 48282 GCCAGGCGGAGTCTTCACTAATATCTGCATG 48252 >seq482 Length=60659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 44106 TCATTCCCCCTCTC--AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 ||||| ||| ||| || | || |||| ||||| || |||||| || |||||||| Sbjct 60493 TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTA 60552 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || ||||||||||| |||||||| || | |||||||||||| Sbjct 60553 ATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 60612 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | ||| | |||||||| ||| ||||| ||||| Sbjct 60613 AGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCA 60650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984928933399