Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq867 140 8e-28 seq409 136 1e-26 >seq867 Length=9987 Score = 140 bits (154), Expect = 8e-28 Identities = 150/198 (76%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 1487 AAAATGC---AAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAG 1543 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || || || || || || ||||| ||||| || || || Sbjct 1544 CCTTCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCT 1603 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || ||||| |||||||||||||| ||||| ||||| || | ||| Sbjct 1604 GATCAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGAT 1663 Query 178095 TATAACGTCCAAAAAGAA 178112 || ||| |||| || ||| Sbjct 1664 TACAACATCCAGAAGGAA 1681 >seq409 Length=48402 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||||||||| ||||| || || || || || || ||||| Sbjct 48028 CAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCAGAT 48087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| ||||| || ||||| || ||||| || ||||| Sbjct 48088 ACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAG 48147 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| ||| | Sbjct 48148 CGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATT 48207 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| || ||| | ||| || Sbjct 48208 CAGAAGGAGTCAACCCTTCATTTGGTTCTG 48237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711967760918