Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq243 122 8e-23 seq1383 111 1e-19 seq1356 84.2 2e-11 >seq243 Length=644 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| ||||| || ||||| | |||||||| || || Sbjct 116 CATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 175 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || || || || ||| ||||||||| | || || || | Sbjct 176 AGATACCATCGAAAATGTGAAGGCAAAG-ATCCAGGATAAGGAAGGCATTCCTCCTGATC 234 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| |||| ||| | ||| | ||||| | Sbjct 235 AGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACA 294 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| || || || || |||||| |||| || | ||||||| || Sbjct 295 ACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 343 >seq1383 Length=115434 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || || || || ||||| ||||| | ||||| || || Sbjct 113819 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 113760 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || || ||| |||||||||||| | ||||| || Sbjct 113759 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 113700 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| |||||| | || || | ||| | ||||| Sbjct 113699 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 113640 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||||| || || ||| |||||||| |||||| Sbjct 113639 AACATCCAGAAGGAAAGCACTCTTCACTTGGTAC 113606 >seq1356 Length=16176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 31221 GCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGA 31279 |||| || ||||| | |||||||| || || || | |||||| || || || ||| Sbjct 16176 GCAAGACAATCACATTGGACGTTGAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGA 16117 Query 31280 ATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAG 31339 | ||| ||||||||| | || || || ||||||||||| || || || ||||| ||| Sbjct 16116 TTCA-GGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAG 16058 Query 31340 TTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTG 31399 |||| || | ||| | ||||| |||||||| || || || || |||||| || Sbjct 16057 CTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTG 15998 Query 31400 GTACT 31404 || || Sbjct 15997 GTTCT 15993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757518104480