Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq243 104 2e-17 seq1356 82.4 7e-11 >seq243 Length=644 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||| |||| || || | |||||| | || || ||| | || Sbjct 117 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 176 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| ||| ||| || || ||||| ||||| ||||| || Sbjct 177 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 236 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | | || | |||||||| Sbjct 237 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 296 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||||| || || Sbjct 297 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 328 >seq1356 Length=16176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGA 25093 |||||| | || || ||| | || || || ||||| ||||| |||| | ||| || Sbjct 16168 ATCACATTGGACGTTGAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGATTCAG-GA 16110 Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 || ||||| ||||| ||||| || ||||| | |||||||||||||| || | || || Sbjct 16109 TAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGA 16050 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 || | || | |||||||| ||||| || || || || || ||||| || || | Sbjct 16049 TGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCG 15990 Query 25214 GCTAAGAGGAGG 25225 ||| |||| || Sbjct 15989 TCTACGAGGCGG 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319581791110