Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1383 165 2e-35 seq243 163 5e-35 seq1356 149 1e-30 seq1046 84.2 4e-11 seq940 84.2 4e-11 seq894 84.2 4e-11 seq746 84.2 4e-11 >seq1383 Length=115434 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || ||| || || |||||||| ||||| ||||| ||||||||||| || Sbjct 113607 TACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTC 113666 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || || ||||| || || | || || || || |||||||||||||||||||| Sbjct 113667 GAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTG 113726 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || |||||||| || | | || || |||| ||||||||||| Sbjct 113727 GATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTT 113786 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||||||| || ||||| || |||||| || Sbjct 113787 CCCCGTGAGGGTTTTCACGAAGATTTGCATTTTG 113820 >seq243 Length=644 Score = 163 bits (180), Expect = 5e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| ||||| || || || ||||| || || ||||| ||||| || |||||||| || Sbjct 331 CGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCG 272 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | |||||| ||||| || ||||| | || || || || |||||||||||||| Sbjct 271 TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTA 212 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||||||||| || |||||||| |||| || || || ||||| ||||| Sbjct 211 TCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATT 152 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| || ||||||||||| Sbjct 151 GTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 117 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| ||||| || || || ||||| || || ||||| ||||| || ||| |||| || Sbjct 559 CGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTTTCCTTCCG 500 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | |||| | || || || || | || |||| || | ||| | || ||| Sbjct 499 TCCTCCATCTGCCTGCCAGCAAAAATTACACTCTGTTCATCCGCGGGACTCCCCCCCTCA 440 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||||||||| || |||||||| |||| || || || ||||| ||||| Sbjct 439 TCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATT 380 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| || ||||||||||| Sbjct 379 GTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 345 >seq1356 Length=16176 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || ||||| ||||| || Sbjct 15978 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 16037 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||||||| ||||| || | |||||| ||||| || ||||| | || || || || ||| Sbjct 16038 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 16097 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||||||||| || |||||||| |||| || || || Sbjct 16098 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 16157 Query 68415 TCCAAGGTGATGGTTTT 68431 ||||| ||||| || || Sbjct 16158 TCCAATGTGATTGTCTT 16174 >seq1046 Length=551946 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 288353 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 288408 >seq940 Length=66353 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 63727 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 63782 >seq894 Length=160938 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 150164 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 150219 >seq746 Length=89062 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 82455 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 82510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921604036673680