Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq243 95.1 1e-14 seq1356 89.7 4e-13 >seq243 Length=644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 92/115 (80%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| ||||| |||| |||||| || ||||||||||||||||||||| | Sbjct 343 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA- 285 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || |||| |||| |||||||||||||| || || ||||||||||| Sbjct 284 AAGTGTC-CTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| ||||| |||| |||||| || ||||||||||||||||||||| | Sbjct 115 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-A 57 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || |||| |||||||||||||| || || ||||||||||| Sbjct 56 AAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 3 >seq1356 Length=16176 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || ||||| |||| |||||| || ||||||||||||||||||||| | Sbjct 15978 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-A 16036 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || |||| |||||||||||||| || || ||||||||||| Sbjct 16037 AAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 16090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054686318388