Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1383 123 6e-23 seq1234 102 2e-16 seq243 96.9 8e-15 >seq1383 Length=115434 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||| | |||| |||||||| || ||||| || || || | ||| || | || || | Sbjct 113606 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 113665 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 | | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | Sbjct 113666 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 113725 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 |||||||||| || || ||||| || | ||| | || || || |||||||| || | Sbjct 113726 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 113785 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||| || || || || ||||| || |||||| ||| Sbjct 113786 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 113821 >seq1234 Length=44139 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAG 269229 |||||| ||||| ||||||||||| || ||||| || |||| || || | ||| Sbjct 31820 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 31761 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || | | ||| | | ||||||||| | ||||||||| || || || ||| |||| || Sbjct 31760 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 31701 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG----AATCC 269345 || ||||||||||| ||||| ||| | ||||| ||| | || || ||| || | Sbjct 31700 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 31641 Query 269346 A--GAAGA-CAATATTTTTGCCATCGATGATGATTTTTAA 269382 | ||||| ||| | |||| | |||||| |||||| ||| Sbjct 31640 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 31602 >seq243 Length=644 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | || || | ||||| || | || || || || || Sbjct 307 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAA 248 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | || || ||||| ||||||||||| || || ||||| ||| Sbjct 247 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 188 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| || ||||||||||| || Sbjct 187 TCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACA 128 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 127 AATATCTGCAT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179630307770732