Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1383 98.7 7e-16 seq243 93.3 3e-14 >seq1383 Length=115434 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || ||||||||||| ||| | ||| | || || Sbjct 113608 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 113667 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| |||||| | |||| |||||| || || ||||| ||||||||||| Sbjct 113668 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 113727 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| |||||| |||| || ||||| | || ||||| | || |||||||| Sbjct 113728 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 113787 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || |||||||| || Sbjct 113788 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 113819 >seq243 Length=644 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | ||| ||||||||||| || || || || ||||||||||| Sbjct 345 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 286 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || |||| || | || ||||| || | || | |||||| || || | Sbjct 285 AAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 226 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| || ||| |||| || ||||| || Sbjct 225 GAATGCCTTCCTTATCCTGGATCTTTGC-CTTCACATTTTCGATGGTATCTGATGGCTCA 167 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || || |||||||| || ||||| || ||||| Sbjct 166 ACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385056990290