Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1383 98.7 9e-16 seq33 93.3 4e-14 >seq1383 Length=115434 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 |||||| ||||| || ||||| || ||| | ||| || | |||||||| ||| | Sbjct 113625 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 113684 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 |||| || ||||| || |||||||||||||| || ||||| ||||| || | Sbjct 113685 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 113744 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | ||| || |||| ||| || || || || | ||||| || || || ||||| || Sbjct 113745 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 113804 Query 45329 AAAAATTTGCAT 45340 || |||||||| Sbjct 113805 GAAGATTTGCAT 113816 >seq33 Length=64344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 ||||||| || || || |||||| | ||||| ||||| ||||||||||| | ||| ||| Sbjct 23222 TCGAAACAGGCACCCCCTACATGATGTACAAGGACGCATGCAACAGGAAGAGCAACCAGC 23281 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 |||||||| | || || |||||||| |||| |||||| | || |||| | | Sbjct 23282 AAAACTTGGGGATCATTCGATCGAGTAATCTGTGCTGCGAAATCGTGGAGTACACCAGTC 23341 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 |||| | || || ||||| || ||||| || Sbjct 23342 CCGACGAGGTCGCTGTGTGCAACTTGGCCTC 23372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994193836240