Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq754 127 2e-23 seq1563 107 1e-17 >seq754 Length=117916 Score = 127 bits (140), Expect = 2e-23 Identities = 378/580 (65%), Gaps = 11/580 (2%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || ||||||||||| || || || || ||||||||||| | | || Sbjct 68048 ACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACATTCATTTCACCCTGTCCCTTC 67989 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || |||||||| || | || ||||| || || || ||||| || | | ||| || Sbjct 67988 TTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGTTAATGATACGAAGAACGTTC 67929 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| ||||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 67928 AGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCTGAGAATCGTTGAAGTATGCC 67869 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || || ||||||||||| || | |||||||| |||| | | || ||| ||| Sbjct 67868 GGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAACGAACGACTCGGCAATTTCCTTC 67809 Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGG-GGAATATTGCTTGGATTCATTTTG 518406 || || | | ||| | ||||||| || || ||| | | ||| | || ||| Sbjct 67808 ATCTTCACCAGCACCATGGCGGAAATTTCCTCCGGATGAAAAGT-CTTCGTAGCACCTTG 67750 Query 518407 ATATGATACTTCAAAATATGGTTTA------TTACCAACATTAATAACTTTAAATGGCCA 518460 || ||||||| | ||| ||| | ||| | | | || | || ||||| Sbjct 67749 GTAGTTCACTTCAATAAGTGGCTTACCCCCGCTTCCAGCCT---TGACCGTGAACGGCCA 67693 Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520 || ||||| || || || || |||||| || | | ||||| | || || || Sbjct 67692 GTGCTTCATGTCCGACTGCACCGCGGGGTCATCGAACTTCCGTCCAATGAGACGCTTCGC 67633 Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580 ||||||| || || || || | || | || | ||| || || || || | ||| Sbjct 67632 GTCAAAAACGGTGTTTTCGGGGTTCCTCGCCACCTGGTTTTTCGCGGCGTCGCCCACCAG 67573 Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640 | ||||| || || |||| ||||| || || || || | ||||| || || ||||| Sbjct 67572 TCGCTCTGTGTCGGTGAATGCGACATAGGAAGGGGTGGTTCTGTTACCCTGGTCGTTCGC 67513 Query 518641 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || || || || | || | ||||||||| || ||| Sbjct 67512 TATGATCTCGACGCCTTCGTTCTTCCATACACCCACGCAA 67473 >seq1563 Length=156094 Score = 107 bits (118), Expect = 1e-17 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||| ||||| || ||||| | || | | |||||||| || || Sbjct 7169 CCATATGCAATAGCAGCCGCAGTGGGCTCATTGAGGATACGGATTACATTAAGCCCCGCG 7110 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| ||||| || || || ||||| | ||||| ||| || |||||||||||||||||| Sbjct 7109 ATTGCGCCTGCGTCCTTTGTTGCTTGGCGTTGTGCATCATTGAAATATGCAGGAACAGTA 7050 Query 518297 ATAACGGCATCAGTTACTTCT-TTACCAA 518324 | ||| |||| |||||||| || |||| Sbjct 7049 ACAACCGCATTTTTTACTTCTCTTCCCAA 7021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780743300469364