Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq754 138 9e-27 seq1563 95.1 1e-13 seq1356 95.1 1e-13 seq1383 91.5 1e-12 >seq754 Length=117916 Score = 138 bits (152), Expect = 9e-27 Identities = 358/540 (66%), Gaps = 23/540 (4%) Strand=Plus/Plus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 || |||||||| ||| || ||||| ||| | || | || || || || || || Sbjct 67459 GGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAGATCATAGCGAAC 67518 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || || ||||||||||| || || || ||||| | ||||| || || || | | || Sbjct 67519 GACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACAGAGCGACTGGTG 67578 Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAA 550189 || || || || ||| | || | | | || || || || ||||||| || || Sbjct 67579 GGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTTTTTGACGCGAAG 67638 Query 550190 CGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCT 550249 ||| | |||||| | | || |||| | | || ||| | || |||||||| ||||| Sbjct 67639 CGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATGAAGCACTGGCCG 67698 Query 550250 TTCCAAATTGTTAATGTTTCTGGAA---------AACCTTATATTGAAGCTACTCATGAA 550300 ||| | || || | |||||| | || |||||||| | | || Sbjct 67699 TTC---ACGGTCAAGG---CTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAACTACCAA 67752 Query 550301 GGATCTGTTA--AACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATG 550357 || || || || | |||||| || || ||||||| | ||||| | |||| ||| Sbjct 67753 GG---TGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGAAGATG 67809 Query 550358 AAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 || ||| ||| ||| | || ||||| ||||||||| ||| || || || || ||||| Sbjct 67810 AAGGAAATTGCCGAGT-CGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAGTACC 67868 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||||| || || || || || || || || || || || || || |||||| || || Sbjct 67869 GGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGGGTCT 67928 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||||||||| || || || ||||| ||||| || | || ||||| || || || Sbjct 67929 GAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGGACAA 67988 Score = 95.1 bits (104), Expect = 1e-13 Identities = 205/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 |||| || || | || |||| || | || || || ||||| || || || | ||||| Sbjct 68594 TACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTTGGAGACTGCTGGAG 68653 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 | | ||||| || | ||||| | || || || || || || || || | || | Sbjct 68654 GCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAAGAAGTCCCAGGTCT 68713 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || || |||| || || | | || |||||| | |||||||||||| | Sbjct 68714 TCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTTTGAAGGAGAACGTG 68773 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || ||||| || | | || | || | || || || || |||||||| | Sbjct 68774 CCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATGGAATCCCTCCTGCCC 68833 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 | ||||| || || ||||| ||||| || |||||||| ||||| ||||| || |||| | Sbjct 68834 CCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAAATGGCATCATGAACG 68893 Query 552583 TGACTGC 552589 | ||||| Sbjct 68894 TCACTGC 68900 >seq1563 Length=156094 Score = 95.1 bits (104), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 |||||| | |||| || | ||||| || |||||||| ||||| ||||||| ||||| Sbjct 7029 AGAAGTAAAAAATGCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGC 7088 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 || || || || || || || || |||||||| | ||||| ||||||| || || Sbjct 7089 AACAAAGGACGCAGGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCAC 7148 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| ||||||||||| | || || Sbjct 7149 TGCGGCTGCTATTGCATATGGATTGGACAA 7178 >seq1356 Length=16176 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||||||| || || ||| |||||||||| || || || Sbjct 15987 AGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 16046 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || ||||||||||| || | ||||||||||||||||| ||||| Sbjct 16047 CCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 16106 Query 563377 TTATCTTGAATTTTT 563391 ||||| ||||| ||| Sbjct 16107 TTATCCTGAATCTTT 16121 >seq1383 Length=115434 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| || ||||| || || |||||||| | || || || ||| || | Sbjct 113610 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 113668 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | |||||||| || ||||| || | ||||||||||| ||||| ||||| || ||||| | Sbjct 113669 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 113728 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||||| || || ||||| | | | || || || || | ||||| Sbjct 113729 TTTTCGCCTTTACATTTTCGATGGTATCCG-AAGGCTCCACGTCCAGCGTGATGGTTTTC 113787 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| ||||| |||||||| Sbjct 113788 CCCGTGAGGGTTTTCACGAAGATTTGCAT 113816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029211702091060