Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq243 114 1e-20 seq1356 93.3 3e-14 >seq243 Length=644 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 344 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 285 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||||| |||||||| || || ||||| ||||| | || Sbjct 284 AAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 225 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || |||||| || ||| | | | ||||| | ||| || Sbjct 224 AATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 165 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| ||| || ||||| |||||||| Sbjct 164 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 117 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 572 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 513 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||| | || ||||| || | | ||||| ||||| ||| Sbjct 512 AAGTTTCCTTCCGTCCTCCATCTGCCTGCCAGCAAAAATTACACTCTGTTCATCCGCGGG 453 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| ||| || |||||| || ||| | | | ||||| | ||| || Sbjct 452 ACTCCCCCCCTCATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 393 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| ||| || ||||| |||||||| Sbjct 392 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 345 >seq1356 Length=16176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||| |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 15978 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 16037 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || |||| |||||| |||||||| || || ||||| ||||| | ||| Sbjct 16038 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 16097 Query 48660 ACGCCCTCCTTGTCGCTAATCTTT 48683 | ||| ||||| || ||||||| Sbjct 16098 ATGCCTTCCTTATCCTGAATCTTT 16121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930199572862