Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1356 102 5e-16 seq243 96.9 2e-14 seq1383 91.5 1e-12 >seq1356 Length=16176 Score = 102 bits (112), Expect = 5e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | |||||| || || || || || ||||||| || || Sbjct 15984 CGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTC 16043 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||| || || ||||| || |||||||| ||||| || |||||||||||||| ||| Sbjct 16044 CTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCT 16103 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || ||||||||| || ||| ||| || ||||| Sbjct 16104 TCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATC 16144 >seq243 Length=644 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || ||| || || || ||||| || |||||||| ||||| || Sbjct 295 TTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGC 236 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| |||||||| || || |||||| || ||| ||| || ||||| Sbjct 235 TGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCT 176 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | ||| || || || || || || |||||||| || || || || Sbjct 175 GATGGCTCAACGTCCAA-TGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTG 120 >seq1383 Length=115434 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || | || ||||| | || || || ||| || | Sbjct 113610 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 113668 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || |||||||| ||||| ||||| || |||||||| ||||| |||||||||||||| | Sbjct 113669 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 113728 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| || ||||| | | || || || || ||||| | Sbjct 113729 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 113788 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || ||||| ||||| Sbjct 113789 CCGTGAGGGTTTTCACGAAGATTTG 113813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268110825605912