Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq754 437 1e-117 seq1383 165 1e-35 seq1563 163 4e-35 seq243 161 1e-34 seq1356 145 1e-29 >seq754 Length=117916 Score = 437 bits (484), Expect = 1e-117 Identities = 1053/1582 (67%), Gaps = 15/1582 (1%) Strand=Plus/Plus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| ||||| | || || || ||||| || || ||||||||| | || || | || | Sbjct 67445 TTGGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCG 67504 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || |||| ||||| || ||| | || || || || || || || || || || | Sbjct 67505 AGATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACA 67564 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || || || || || ||||| ||||| ||| || | |||||| || || | Sbjct 67565 CAGAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCG 67624 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||||||||||||||| ||||| || ||||| || || || || | Sbjct 67625 TTTTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACA 67684 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | || | || | | |||||| | ||| | || Sbjct 67685 TGAAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGA 67744 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | || |||| | ||| ||| ||| || |||||||| | |||||| || | | Sbjct 67745 ACTACCAAGGTGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 67804 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || || ||| | || ||| || || || || ||| | || | Sbjct 67805 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 67864 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 |||| || ||||||| ||||| || || ||||| ||||||||||| | ||||||||| Sbjct 67865 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 67924 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| |||| | || || || || || || || || || || || |||||||||| Sbjct 67925 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 67984 Query 195843 ACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| ||||| | ||||| || | |||||||| || || Sbjct 67985 ACAAGAAG--GGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATT 68042 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || || || || |||||||| |||||||| Sbjct 68043 TGATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGA 68102 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| | ||||| || || ||||| | || | | | | || || | || | Sbjct 68103 TACCCATTTGGGTGGAGAGGACTTCGACAACAGACTCGTG-GACTTCTGCATGCAGGATT 68161 Query 196020 TCCGTCGAAAGAAT--AAGAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 || || |||||| ||| ||| || || || || | ||||| | || || Sbjct 68162 TCAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGC 68221 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||| |||||| | || || || || ||||| | | || | | | |||| Sbjct 68222 GCACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGA 68281 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | |||||| ||||||| || ||||| | | | || || |||| |||||||| || | Sbjct 68282 TCGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGG 68341 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 || | | |||| || |||| | | | | || || || | || | |||| Sbjct 68342 AGCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACG 68401 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | || || ||| | || | || ||||| | || ||||| || |||||||||| Sbjct 68402 CTGCCATCGACAAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 68461 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 | |||||||| ||||| | || || ||||||||| | || || | | || Sbjct 68462 CCAAGATTCAGCAGAT--TATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 68519 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||||||||| || || || || ||||| || || ||||| || |||||| ||||| Sbjct 68520 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 68579 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 |||| | | || || ||||||||||| || || || || || | || || || | Sbjct 68580 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 68639 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| || | || || | ||||| || || || || || Sbjct 68640 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 68699 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| || ||||| | || || | || || || ||||| || |||||||| | Sbjct 68700 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 68759 Query 196615 TGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | || || | ||||||||| | || | || | ||| | ||| | Sbjct 68760 TGAAGGAGAACG-TGCCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATG 68818 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| ||| | || || || || || | || ||||||||| || |||| Sbjct 68819 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 68878 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| || | |||||||| || || ||| |||| ||||| | |||| || Sbjct 68879 ATGGCATCATGAACGTCACTGCCACCGAAAAGAACACTGGGAAATCCAACCAGATCACGA 68938 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 |||| || || ||||| || || || || ||||| || || ||||| ||| || | Sbjct 68939 TTACGAACGATAAGGGCCGCCTGTCACAGAGTGAAATCGACCGCATGGTGGCAGAAGCTG 68998 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| || || ||||| Sbjct 68999 AGAAGTACAAGGCGGAGGACGA 69020 >seq1383 Length=115434 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||||| || || ||||| ||||| || || || ||| | || Sbjct 113816 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 113757 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || || ||||| |||||||||||||| || |||||| Sbjct 113756 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 113697 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| || ||||| | |||||| | ||||||||| Sbjct 113696 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 113637 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| ||||| ||| Sbjct 113636 ATCCAGAAGGAAAGCACTCTTCAC 113613 >seq1563 Length=156094 Score = 163 bits (180), Expect = 4e-35 Identities = 409/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||| | || || |||||||| ||||| || || | | | | | || Sbjct 6637 ATTGGCATTGATCTCGGTACCACTTACTCGTGTGTGGGGGTGTACCGCCACGGAAGAGTT 6696 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| |||||||||||||||||||| | ||||| ||||| | ||| | ||| Sbjct 6697 GATATTATTCCGAATGACCAAGGAAACCGCATTACTCCTAGCTACGTGTCTTTTTCCGAT 6756 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||| | |||| || || || || || | |||| ||||| ||||| Sbjct 6757 GATGAAAGGAAAATTGGGGAAGCTGCCAAGAACGACGCAGCCGATAACCCGTCAAATACC 6816 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | || |||| |||||| || || || ||| || || |||| ||| ||| Sbjct 6817 ATTTTCGACGTGAAGCGCCTCATGGGGCGCCGTTTCAACGAGCCACAAGTGCAATCCGAC 6876 Query 195542 ATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || || |||| | ||||||| | || | | || ||||| |||| | Sbjct 6877 ATGAA--ACTGCTGCCTTATGAGATCATTAA---TAAAGATGGAAAGCCCTACATTAGAG 6931 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGA 195659 | | |||| || | |||| | ||||||| || || | || | ||||||||| Sbjct 6932 TCAATGTTCAGGGCCAACAGAAGGAGCTTGCTCCAGAGGAGGTGTCTGCCATGGTGTTGG 6991 Query 195660 TTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||| | || || | || | |||| | | || ||| |||| ||||| Sbjct 6992 GCAAGATGAAGCAAGTGGCCGAGAACTATT-TGGGAAGAGAAGTAAAAAATGCGGTTGTT 7050 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||| ||||||| || || ||||||||||| | || || Sbjct 7051 ACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCAGGCGCAATC 7110 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| || || ||| | | || ||||||| || || |||||||| ||||| ||||| Sbjct 7111 GCGGGGCTTAA-TGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATTGCATATGG 7169 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||| |||||| || || | | ||| ||| ||||| ||||||||||| Sbjct 7170 ATTGGACAAG---AAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGTGGTGGTAC 7223 Query 195898 GTTTGATGTCTC 195909 || |||||||| Sbjct 7224 CTTCGATGTCTC 7235 >seq243 Length=644 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || || ||||| || || ||||| | || |||||| | ||| Sbjct 117 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 176 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 177 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 236 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || || || | || || ||||||||||| Sbjct 237 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 296 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 297 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 328 Score = 113 bits (124), Expect = 6e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || || ||||| || || ||||| | || |||||| | ||| Sbjct 345 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 404 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||| ||| || | ||| | ||| | Sbjct 405 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATGAGGGGGGGAGTCCCGCGGATGAA 464 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | | ||||||||||| | ||| | || || ||| | | || ||||||||||| Sbjct 465 CAGAGTGTAATTTTTGCTGGCAGGCAGATGGAGGACGGAAGGAAACTTTCTGATTACAAC 524 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 525 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 556 >seq1356 Length=16176 Score = 145 bits (160), Expect = 1e-29 Identities = 154/202 (76%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 171892 AAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATT 171951 || || ||||| | || |||||| | ||||| || ||||| || | || || |||||| Sbjct 16174 AAGACAATCACATTGGACGTTGAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGATT 16115 Query 171952 CAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTT 172011 || ||||||||||||||||| || |||||||| || || |||||||| || || ||||| Sbjct 16114 CAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTG 16055 Query 172012 GAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTT 172071 || ||||| | || || ||||||||||| |||| |||||||| || || || | ||| Sbjct 16054 GAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTGGTT 15995 Query 172072 CTAAGGCTTCGGGGTGGTGCAA 172093 || | || || || || |||| Sbjct 15994 CTGCGTCTACGAGGCGG-GCAA 15974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657849292091680