Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1383 120 3e-22 seq243 113 4e-20 seq1356 95.1 1e-14 >seq1383 Length=115434 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || ||||| || ||||| || || || | | Sbjct 113816 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 113757 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| || ||||||||||| ||||| || || || ||||| Sbjct 113756 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 113697 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || |||||||| |||||| ||| | | | || ||||| ||| Sbjct 113696 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 113637 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||| || || |||||||| Sbjct 113636 ATCCAGAAGGAAAGCACTCTTCACTTGGT 113608 >seq243 Length=644 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | || || || |||| | Sbjct 117 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGA-GCCATC 175 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || ||||||||| || || ||||| || ||||| ||||| Sbjct 176 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 235 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | || |||||||| || ||||||||||| || | | || ||||| || Sbjct 236 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAA 295 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| ||||| || || || || ||||| |||| ||| | || ||| Sbjct 296 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGGC 344 >seq1356 Length=16176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 |||||| || || || ||||| || ||||| ||||| || ||| | || |||||||| || Sbjct 16121 AAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAA 16062 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 |||||||||||| || | | || ||||| |||||||| ||||| || || || || Sbjct 16061 GCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCA 16002 Query 24907 CTTGGTGTTGCG 24918 ||||| |||| Sbjct 16001 TTTGGTTCTGCG 15990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888635790320