Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq754 127 2e-23 seq1563 116 3e-20 >seq754 Length=117916 Score = 127 bits (140), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||||||| || ||||||||||| || || || || ||||||||||| | | || Sbjct 68049 AACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACATTCATTTCACCCTGTCCCTT 67990 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || || |||||||| || | || ||||| || || || ||||| || | | ||| || Sbjct 67989 CTTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGTTAATGATACGAAGAACGTT 67930 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| ||||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 67929 CAGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCTGAGAATCGTTGAAGTATGC 67870 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || || ||||||||||| || | |||||||| |||| Sbjct 67869 CGGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAA 67832 >seq1563 Length=156094 Score = 116 bits (128), Expect = 3e-20 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||| ||||| || ||||| | || | | |||||||| || || Sbjct 7169 CCATATGCAATAGCAGCCGCAGTGGGCTCATTGAGGATACGGATTACATTAAGCCCCGCG 7110 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||| || || || ||||| | ||||| ||| || |||||||||||||||||| Sbjct 7109 ATTGCGCCTGCGTCCTTTGTTGCTTGGCGTTGTGCATCATTGAAATATGCAGGAACAGTA 7050 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 | ||| |||| | |||||||| |||| | ||| Sbjct 7049 ACAACCGCATTTTTTACTTCTCTTCCCAAATA 7018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740552141336244