Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq243 122 8e-23 seq1383 100 3e-16 seq33 100 3e-16 seq1356 84.2 2e-11 >seq243 Length=644 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || |||||||| | || |||||| ||| Sbjct 322 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGC 263 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || ||||||| |||||||| || ||||| ||||||||||| || |||| Sbjct 262 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 203 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | || || | ||||| ||||| | |||| || ||||| Sbjct 202 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 143 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || || || ||||||||| Sbjct 142 GTCAGAGTCTTCACAAATATCTGCATG 116 >seq1383 Length=115434 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||| || || ||| |||| || |||||||| || || || |||||||||||| Sbjct 113662 TCCTCGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTG 113721 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || || | ||||||||||| | |||| | Sbjct 113722 TCTTGGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATG 113781 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| || ||||| Sbjct 113782 GTTTTCCCCGTGAGGGTTTTCACGAAGATTTGCAT 113816 >seq33 Length=64344 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| | |||||||| || ||| || || | ||||||| ||||| ||| |||| Sbjct 23372 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 23313 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| || || || | |||| ||| | || |||||||| |||||||| |||||| Sbjct 23312 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 23253 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 ||||||| |||||| || ||| ||||| | ||||| || || Sbjct 23252 TTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCA 23210 >seq1356 Length=16176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 15999 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 16055 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || Sbjct 16056 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGA 16115 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| ||||| | |||| || ||| Sbjct 16116 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 16175 Query 133632 C 133632 | Sbjct 16176 C 16176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411167840560