Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq754 282 1e-70 seq243 168 2e-36 seq1356 152 2e-31 seq1383 131 5e-25 seq1563 96.9 1e-14 seq798 89.7 2e-12 seq941 86.0 2e-11 >seq754 Length=117916 Score = 282 bits (312), Expect = 1e-70 Identities = 940/1447 (65%), Gaps = 19/1447 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || ||||| || | ||| ||| | || || | || || Sbjct 67447 GGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAG 67506 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 67507 ATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACA 67566 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| || | || || | || ||||| || | || || || |||| || ||| Sbjct 67567 GAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTT 67626 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| || ||||| || ||||| | | || |||| | || || || | Sbjct 67627 TTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATG 67686 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || || || | | ||| | ||| ||| ||||||| || | Sbjct 67687 AAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAAC 67746 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTAGTTA 349562 || |||||| || || || |||| | ||| || ||||||| | ||||| | || | Sbjct 67747 TACCAAGGTGCTACGAAGAC--TTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 67804 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||||||||| || | | | || || ||| | || || |||||||| | Sbjct 67805 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 67864 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 |||| || || || || ||| | ||||| || ||||| || || |||| ||||||| Sbjct 67865 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 67924 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || ||||| || || || |||||||| || || ||||| || | Sbjct 67925 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 67984 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | |||| ||| | || || || || | |||||||| || |||| Sbjct 67985 ACAAGAAGGGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATTTG 68044 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || || || || ||||| || || || || |||||||||| Sbjct 68045 ATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGATA 68104 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG--TTAAAGAATT 349920 | ||| | |||||||| || || || || | |||| | | || || | | || || Sbjct 68105 CCCATTTGGGTGGAGAGGACTTCGACAACAGACTCG--TGGACTTCTGCATGCAGGATTT 68162 Query 349921 TAAGCG--TCAAGCTAA-AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | ||| || | | || | || | | ||||| | Sbjct 68163 CAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGCG 68222 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| ||||| | || ||||| || | || | ||||| || | || || || Sbjct 68223 CACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGAT 68282 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| || ||| |||| |||| | |||| || | || || || || || || Sbjct 68283 CGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGGA 68342 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || |||||| || || | | | || ||||| || || || || || || Sbjct 68343 GCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACGC 68402 Query 350158 AAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || | || ||| || | || || || || || || || ||||| ||||||| Sbjct 68403 TGCCATCGAC-AAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 68461 Query 350217 CAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 | || |||| ||| | |||| ||||| || |||| ||| || || | | || || Sbjct 68462 CCAAGATTCAGCAG--ATTATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 68519 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || ||||| |||||||| || ||||| | ||| | || Sbjct 68520 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 68579 Query 350335 TAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATT 350394 || | ||| | | | ||||| | || ||||| ||| | ||||| |||||||| || Sbjct 68580 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 68639 Query 350395 AGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAA 350454 || ||| |||| | || ||||| | || | || | || | || || || Sbjct 68640 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 68699 Query 350455 AAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATT 350514 |||||||| || | || | ||||| || ||||||| || |||||||| || Sbjct 68700 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 68759 Query 350515 TGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG-TG 350573 |||||| |||||||| || || ||||| || ||||| || || | || | || Sbjct 68760 TGAAGGAGAACGTGCCATGACCAAGGATAACAA-CCTCTTGGGCAAGTTCCACTTGGATG 68818 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 ||| || || || | || || ||||| || |||||| | |||||||||||| ||| Sbjct 68819 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 68878 Query 350634 ATGGTAT 350640 |||| || Sbjct 68879 ATGGCAT 68885 >seq243 Length=644 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 347 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 288 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | || || || || || || || ||||| || ||||| ||||||||||| Sbjct 287 AGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 228 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 227 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 168 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | |||||| || || || || || ||||| |||||||| Sbjct 167 AACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 117 >seq1356 Length=16176 Score = 152 bits (168), Expect = 2e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| || ||||| || |||||||| | ||| | ||||| Sbjct 15993 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 16052 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||| Sbjct 16053 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 16112 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || ||||| || || | ||| ||||| ||||| || | ||| | |||| Sbjct 16113 TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTC 16172 Query 140706 TT 140707 || Sbjct 16173 TT 16174 >seq1383 Length=115434 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || || || || || ||||| || | || | |||||| || | Sbjct 113610 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 113668 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || | Sbjct 113669 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 113728 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || |||||||| || || | ||| || || || || || || || | || || | Sbjct 113729 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 113788 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || || || |||||| Sbjct 113789 CCGTGAGGGTTTTCACGAAGATTTGCATT 113817 >seq1563 Length=156094 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||||| || | || |||||| || | || || ||||| || | ||||| || Sbjct 6982 ATGGTGTTGGGCAAGATGAAGCAAGTGGCCGAGAACTATTTGGGAAGAGAAGTAAAAAAT 7041 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 7042 GCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCA 7101 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || |||||| | ||||| | | || | ||||| |||||||| || || ||| Sbjct 7102 GGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATT 7161 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 |||||||| | || || || ||| || || | ||| | | | ||| | ||| Sbjct 7162 GCATATGGATTGGACAA---GAAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGT 7215 Query 349790 GGTGGTACTTTTGATGTATC 349809 |||||||| || ||||| || Sbjct 7216 GGTGGTACCTTCGATGTCTC 7235 >seq798 Length=109141 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || ||| || || Sbjct 17333 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCAAGTCCGCG 17392 Query 423824 TGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||||| |||||| |||||||| Sbjct 17393 TGGGTTCAAATCCCACTTCGTGCATT 17418 >seq941 Length=146266 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC---GAAAGCCT 423821 |||| ||||||||||||||| |||||||| |||||||| || |||| ||| || Sbjct 66049 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGTTCCCCTGGTCGTGAAGACCG 66107 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| |||||||||||||||||| Sbjct 66108 CGTGGGTTCGAACCCCACTCCGTGCATT 66135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515223453769982