Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq33 120 3e-22 >seq33 Length=64344 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 |||||| ||||||||||| | ||||||||||| |||||||| | | ||||||||||| Sbjct 22756 CTCCATAAAGAGGTCCGGAACCCACAGGGCCGGAAAGAGGTCCCTGGCGCGCATCTCCTC 22697 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | || || || || | || ||||| || | |||||| | ||||| ||||||| Sbjct 22696 CTTCCCATGATTTTTTCGGATATCCAGAAACTCGAAGATGTCTGAATGCCAGGGCTCCAC 22637 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 || | || | |||||||||||||||||||| |||| |||||| || | | || Sbjct 22636 GTACACTGCAAGGCTGCCCTTGCGCTTGCCGCCGCCTTGGTCGACGTAGCGAGAGGCGTC 22577 Query 79560 GTTGAAAACTC 79570 |||||| |||| Sbjct 22576 GTTGAAGACTC 22566 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 19436 GTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTC 19495 ||||||||| || | | | |||||| |||| || |||||||| ||||||||| | Sbjct 22568 GTCTTCAACGACGCCTCTCGCTACGTCGACCAAGGCGGCGGCAAGCGCAAGGGCAGCCTT 22627 Query 19496 GCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAAC 19555 || | ||| | ||||| ||||| | ||| || | || || || || | || || Sbjct 22628 GCAGTGTACGTGGAGCCCTGGCATTCAGACATCTTCGAGTTTCTGGATATCCGAAAAAAT 22687 Query 19556 CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTA 19615 || || | |||||||||||| | |||||||| ||||| ||||| |||||||||| Sbjct 22688 CATGGGAAGGAGGAGATGCGCGCCAGGGACCTCTTTCCGGCCCTGTGGGTTCCGGACCTC 22747 Query 19616 TTCATGGAG 19624 || |||||| Sbjct 22748 TTTATGGAG 22756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513870643360