Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq243 143 3e-29 seq1383 138 1e-27 seq1356 136 5e-27 seq33 107 2e-18 seq899 95.1 1e-14 >seq243 Length=644 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || |||||| || Sbjct 117 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 176 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 177 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||| | | || || | || || || Sbjct 237 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 296 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 297 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 343 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || |||||| || Sbjct 345 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 404 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||| ||| | ||| | || | Sbjct 405 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATGAGGGGGGGAGTCCCGCGGATGAA 464 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| || ||||||||||||| | ||| | ||||| | | | || | || || || Sbjct 465 CAGAGTGTAATTTTTGCTGGCAGGCAGATGGAGGACGGAAGGAAACTTTCTGATTACAAC 524 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 525 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 571 >seq1383 Length=115434 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || || || ||| | Sbjct 113817 AATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTC 113758 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||| || |||||||| || ||||| || || || Sbjct 113757 GGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCA 113698 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || |||||||||| | ||||| | || || || Sbjct 113697 GCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAA 113638 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||||||||| Sbjct 113637 CATCCAGAAGGAAAGCACTCTTCA 113614 >seq1356 Length=16176 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27434 GCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAA 27493 ||||||| || || | || |||||| || |||| ||| | |||| ||||||| || | Sbjct 16176 GCAAGACAATCACATTGGACGTTGAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGA 16117 Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||||| ||||| || |||||||| || ||||||||||| |||||||| || ||||| | Sbjct 16116 TTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAGC 16057 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 | ||||||| | || || | || || || | || ||||| || || |||||| | | Sbjct 16056 TGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTGG 15997 Query 27614 TCTTGCGTCTTCGCGGTGGACAA 27636 | ||||||| || || || ||| Sbjct 15996 TTCTGCGTCTACGAGGCGGGCAA 15974 >seq33 Length=64344 Score = 107 bits (118), Expect = 2e-18 Identities = 244/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGC 80783 || || || || || || || | | |||| |||||||| ||| ||| | | || ||| Sbjct 23561 TCCGCGAGCCCTTGCACACCCAAGCCGATGGGGCGGTGTCGCAGGTTGCTGTAGCG-GGC 23503 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || || | ||||| | || |||||||||| |||||||| || || || | ||| Sbjct 23502 TTCTGGGACGGGGTAGTAATTTCTATCGATGACACGGTTCAGATTCCGAGTCATGACCTT 23443 Query 80844 TGTAACATC-ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCG 80896 |||| | |||| | ||| |||||||| | ||| || ||| ||| | Sbjct 23442 CACAACAGCCATGA-GCTTCGCGAAGTCGAAGAGCTTCTTCTCGACATCCACGAATCGAG 23384 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | || || ||| |||| |||||||| || ||||| || | | || |||| |||| Sbjct 23383 GGAGAGACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGA 23324 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||| ||||| |||| || ||| | |||| ||||| |||||| ||| || Sbjct 23323 TTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGT 23264 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||||| |||||| ||||| || || |||| ||| || | ||||| | Sbjct 23263 TGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATAG 23204 Query 81077 CG 81078 || Sbjct 23203 CG 23202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||||| | |||||| |||||||||||||| || ||||| ||| | |||| Sbjct 24615 GCCTGCGTCCTTAAATAGTAAATGCCCGTCTTGAGTCCGGAATTCCACGCGTGGAAGTGC 24556 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | ||||||||| | ||||| ||| |||| ||| || | |||||| ||||| Sbjct 24555 ATCGTCGAGAGCTTCGCGAAAGTGGGATTCCGCATGTGGATATTTAAAGACTGGGACTGG 24496 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT--TG-ACTTTTGTGGAATTTCC 80208 | ||| | | | |||||| ||||||| |||| ||| || || | | || ||| Sbjct 24495 TCTACGAAGGGCGCGCGATCTACCGCCATATCAACAATGCTGCGCTGCTTT---ATCTCC 24439 Query 80209 CATACTGTACGATACACCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || || ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 24438 CAAACCGTGCGATAAAGCTCCTTTAGATCGTCCGGAATCTCTGCCAGATGCTGCACGCTG 24379 Query 80266 CC 80267 || Sbjct 24378 CC 24377 >seq899 Length=69519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCG 32061 |||||||| ||| | | ||| | ||||||||||| | | || ||||||||||| Sbjct 66450 CAGCGCAAAGTGCTGTTTGCCGTCTTCAAGAAGAACACGAAGGCCGAGCTGAAGGTGGCG 66391 Query 32062 CAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAG 32121 || || || || || || || ||||| | || ||||||||||||||| ||| | ||| Sbjct 66390 CAACTCTCTGGGTATGTTGCCGAGCAGAGTGCGTATCACCACGGCGAGCAGTCTTTGCAG 66331 Query 32122 GGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAG 32181 ||||| | | | | || ||| || || || || || || || || || ||| Sbjct 66330 CAAACCATCATTACCATGGCCCAGCGGTTCGTTGGAAGCAACAATCTTAATTTCCTTGAG 66271 Query 32182 CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTAC 32241 || ||| ||||| || || | | || || |||||||| | |||| ||| Sbjct 66270 CCCGTTGGTCAGTTCGGATCCAGAAAAGAGGGCGGGAAGGATGCGTCTGCACCCCGCTAC 66211 Query 32242 ATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG--TCGGACGATGCGG 32299 ||||| || |||||||| | || ||| ||||| |||| | || || | Sbjct 66210 ATCTTTACAAAGCTCGCACCGTACACACGCCTCGTTTTC--CCCGAAGCCGATGACCCTC 66153 Query 32300 TGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGC 32359 ||||| ||||| | ||| || || ||| | |||||||| | |||| ||| || Sbjct 66152 TGCTCGAGTACCTCTATGAGGAGGGGCAGAAGATCGAGCCGAAATACTACGTTCCTGTCA 66093 Query 32360 TTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGT 32404 | || | | | || ||||| ||||||||||| ||||||| Sbjct 66092 TCCCCACCGTGCTTGTCAACGGCAGCGAAGGCATCGGCACGGGGT 66048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570299036565280