Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1383 140 8e-28 seq1356 114 3e-20 >seq1383 Length=115434 Score = 140 bits (154), Expect = 8e-28 Identities = 150/198 (76%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 113819 AAAATGC---AAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAG 113763 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || || || || || || ||||| ||||| || || || Sbjct 113762 CCTTCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCT 113703 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || ||||| |||||||||||||| ||||| ||||| || | ||| Sbjct 113702 GATCAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGAT 113643 Query 178095 TATAACGTCCAAAAAGAA 178112 || ||| |||| || ||| Sbjct 113642 TACAACATCCAGAAGGAA 113625 >seq1356 Length=16176 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||| |||||||| || || || |||||||||||| || ||||| || ||||| || Sbjct 16147 TCAGATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGAT 16088 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| Sbjct 16087 CAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTAC 16028 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| | || || || ||||| || ||| | ||| || Sbjct 16027 AACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTG 15992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203706616047236