Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq978 136 3e-27 seq785 107 1e-18 seq975 95.1 8e-15 seq1077 91.5 1e-13 seq584 84.2 1e-11 >seq978 Length=3519 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2515 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2456 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 2455 TAATCCATTCATGCACGTCACTAATTAGATGACGA 2421 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 435 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 376 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 375 GCCAATATTTAGCTTTAT 358 >seq785 Length=51992 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 77 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 136 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || |||||||| || || || || ||||| | || Sbjct 137 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 196 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 197 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 256 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | || || || || |||||||| Sbjct 257 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 303 >seq975 Length=62782 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| || || |||||||| || | | | || || Sbjct 60916 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 60975 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || || || || ||||| | || | |||||| ||||| Sbjct 60976 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 61035 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || ||||| | || || || | || || ||||| Sbjct 61036 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 61095 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| || ||||| || Sbjct 61096 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 61127 >seq1077 Length=15226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 38069 ACAAATACAAATCCAATCATTACCA-CCTCTCAAACGCAACACCAAATGAAGAGTGCTCT 38127 ||| |||||| |||| ||||| || |||| | ||||| ||||||||||| || || Sbjct 207 ACATATACAA-TCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 150 Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| ||||| ||||||||||| | | | || || | || || |||||||| | Sbjct 149 CCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAA 90 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | || || || ||||| | || | |||||| || ||| ||| ||| ||||||||| | Sbjct 89 TGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTT 30 Query 38248 GGACAGTATCT 38258 || |||||| Sbjct 29 CGATGGTATCT 19 >seq584 Length=44673 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | | |||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 314 CTCTCTTTCCCAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 373 Query 20007 GGTAATATTTAGCCTT 20022 | |||| | ||| || Sbjct 374 GCCAATAGTAAGCTTT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941203293739